genome.fa.s7861.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007861.1 Hibiscus syriacus cultivar Beakdansim tig00110226_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  673920

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4712--4747	18	2.1	16	90	10	54	72	0	13	13	1.13
4740--4787	10	4.6	10	80	10	60	77	0	6	16	0.97
4727--4787	16	3.8	15	77	12	50	77	0	8	14	0.99
4740--4787	22	2.3	20	89	7	69	77	0	6	16	0.97
4882--4939	29	2.0	29	82	0	71	74	6	0	18	1.04
5658--5761	36	2.8	36	82	2	127	31	15	13	39	1.86
6460--8263	106	17.0	106	92	0	2878	23	18	24	33	1.96
8264--8401	36	3.8	36	81	6	163	38	13	21	26	1.91
9142--9218	22	3.5	22	87	0	118	23	10	24	41	1.85
10999--11047	25	2.0	25	84	8	64	48	8	20	22	1.75
11753--11790	5	7.6	5	93	0	58	76	0	0	23	0.79
12867--12950	16	5.1	17	72	15	52	75	0	8	16	1.04
12875--12946	26	2.8	26	79	8	67	75	0	8	16	1.04
12895--12950	10	5.6	10	76	16	62	76	0	5	17	0.96
12895--12942	22	2.3	20	89	7	69	77	0	6	16	0.97
13065--13340	12	21.8	12	69	16	67	56	3	2	37	1.29
13150--13311	2	84.5	2	80	15	155	53	0	2	43	1.18
13306--13346	21	2.0	21	85	9	57	70	4	2	21	1.18
13448--13496	21	2.4	21	79	3	55	63	4	4	28	1.31
13846--13949	36	2.8	36	82	2	127	31	15	13	39	1.86
13979--14034	25	2.2	25	81	12	60	64	7	1	26	1.29
14627--14651	7	3.6	7	100	0	50	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14887--14991	40	2.6	40	81	1	120	34	19	13	33	1.90
15112--15730	307	2.0	309	99	0	1215	32	20	13	33	1.92
16449--16588	71	2.0	71	84	2	183	27	10	12	49	1.74
18114--18204	26	3.5	26	100	0	182	49	0	6	43	1.28
18200--18258	12	5.1	11	78	15	57	47	8	0	44	1.33
27583--27647	33	2.0	33	90	0	103	47	4	1	46	1.32
27586--27663	33	2.3	33	84	6	93	48	6	5	39	1.51
30261--30298	19	2.1	18	85	14	51	15	26	2	55	1.54
35531--35593	21	3.0	21	73	13	56	31	11	33	23	1.90
36050--36121	3	23.7	3	94	2	126	33	1	0	65	1.02
36120--36154	14	2.4	15	95	4	63	62	0	0	37	0.95
43197--43233	10	3.7	10	88	0	56	2	24	18	54	1.57
43243--43276	18	1.9	17	88	5	50	14	23	32	29	1.94
44272--44358	38	2.3	39	88	7	144	39	39	11	10	1.76
45794--45834	16	2.6	16	100	0	82	43	19	12	24	1.85
48342--48367	2	13.0	2	100	0	52	50	0	50	0	1.00
48669--49155	229	2.1	228	96	0	884	44	8	7	40	1.63
49222--49693	181	2.6	181	88	1	660	42	14	16	26	1.86
49614--49660	20	2.4	19	82	10	67	53	10	17	19	1.72
49623--49665	20	2.3	19	88	11	63	51	11	16	20	1.75
51888--51952	21	3.1	21	79	0	76	38	13	30	16	1.88
51986--52051	33	2.0	33	90	0	105	28	0	48	22	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52617--52790	20	8.6	20	83	5	217	34	26	19	19	1.96
52617--52790	60	2.9	60	85	0	249	34	26	19	19	1.96
53173--53243	33	2.2	33	92	0	115	11	22	18	47	1.80
53342--53471	19	7.2	20	70	24	108	46	18	24	10	1.81
53332--53404	21	3.5	21	81	3	94	49	16	23	10	1.77
53341--53494	33	4.4	33	90	6	191	46	20	23	9	1.80
53389--53478	14	5.7	14	72	23	72	44	22	24	8	1.81
53381--53494	33	3.5	33	97	0	210	46	21	22	8	1.79
53512--53567	14	3.7	14	73	17	58	10	25	21	42	1.85
53495--53616	32	3.5	33	84	13	147	11	24	18	45	1.82
53552--53616	21	3.1	21	82	4	96	10	26	15	47	1.78
53551--53614	20	3.2	20	82	4	92	12	25	15	46	1.81
55302--55582	92	3.1	93	96	2	514	23	12	18	45	1.84
55630--55758	19	7.3	19	75	17	125	45	28	17	8	1.77
55666--55758	33	2.8	32	91	4	150	46	27	18	7	1.76
55630--55758	52	2.5	52	74	14	140	45	28	17	8	1.77
55754--55926	19	9.6	19	76	12	159	11	19	23	46	1.82
55776--55832	14	3.7	14	77	20	60	10	21	22	45	1.82
55754--55926	33	4.8	38	82	5	168	11	19	23	46	1.82
57746--57781	12	3.0	12	83	0	54	19	0	16	63	1.30
57849--57884	14	2.6	14	95	0	63	33	0	22	44	1.53
57991--58084	19	5.2	19	82	13	126	46	17	21	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57991--58107	53	2.2	53	95	1	209	45	17	22	14	1.85
58097--58247	19	8.7	19	73	21	143	15	20	18	45	1.86
58097--58216	52	2.3	52	94	1	204	15	21	17	45	1.86
58154--58261	33	3.2	33	87	7	173	12	21	19	46	1.83
60543--60567	12	2.1	12	100	0	50	0	28	0	72	0.86
60742--60788	24	2.0	24	87	8	69	38	21	14	25	1.92
61471--61700	20	11.5	20	85	1	237	19	18	24	36	1.94
61687--61769	21	4.0	21	73	6	78	25	16	24	33	1.96
61667--61765	42	2.4	43	77	11	100	21	18	23	37	1.94
63366--63414	19	2.6	19	93	0	80	30	2	10	57	1.43
63523--64678	199	5.8	199	97	0	2124	36	15	16	31	1.90
66138--66199	18	3.4	18	79	0	79	37	9	35	17	1.83
66138--66229	6	15.3	6	79	0	67	36	7	34	20	1.81
66153--66233	3	27.0	3	75	0	72	35	6	34	23	1.80
66141--66217	36	2.1	36	90	0	118	35	9	35	20	1.85
66141--66229	12	7.4	12	84	0	88	35	7	34	21	1.82
66138--66229	18	5.1	18	77	0	76	36	7	34	20	1.81
67702--68187	183	2.7	182	95	1	864	34	14	16	33	1.90
69050--69276	116	2.0	116	95	0	409	48	3	7	41	1.47
70119--70143	13	1.9	13	100	0	50	36	16	8	40	1.77
77351--77430	24	3.3	24	98	0	151	30	17	15	37	1.90
84961--84994	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85819--85877	28	2.1	29	87	6	86	15	1	8	74	1.13
85816--85878	27	2.3	28	81	13	85	17	1	7	73	1.16
87949--87982	13	2.5	14	85	9	52	20	26	11	41	1.87
89189--89256	8	8.4	8	76	15	68	79	0	14	5	0.91
89200--89254	17	3.1	17	80	17	67	81	0	10	7	0.86
91231--91491	90	2.9	90	90	0	425	24	18	21	35	1.95
91621--91800	67	2.7	67	84	9	244	25	17	14	42	1.87
91621--91828	67	3.2	65	80	11	228	24	19	14	41	1.88
92196--92866	129	5.1	130	83	5	739	29	20	19	30	1.97
93474--93501	2	14.0	2	100	0	56	50	0	0	50	1.00
94307--94369	27	2.3	27	82	15	76	15	4	7	71	1.27
118733--118773	18	2.3	18	91	4	66	29	4	2	63	1.28
119689--119779	31	3.0	31	96	3	168	32	6	17	42	1.75
119959--120000	21	2.0	21	95	0	75	23	21	28	26	1.99
120029--120068	20	1.9	22	90	10	66	37	40	10	12	1.77
120283--120352	34	2.1	32	86	5	95	31	15	30	22	1.95
126871--126926	21	2.7	21	91	0	85	39	17	21	21	1.93
127135--127178	22	2.0	22	86	0	61	22	43	13	20	1.87
127383--127433	19	2.7	19	100	0	102	45	23	21	9	1.82
127445--127503	20	3.0	20	87	0	73	15	18	22	44	1.87
127637--127693	26	2.2	25	79	14	62	19	8	17	54	1.68
128818--128865	18	2.7	18	93	0	87	27	45	12	14	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129405--129471	20	3.4	20	81	2	73	38	23	22	14	1.92
129460--129551	14	5.9	14	72	22	76	48	22	17	10	1.78
129444--129568	33	3.8	33	98	0	241	48	21	18	12	1.80
129444--129573	19	7.6	19	70	23	119	46	21	19	12	1.82
129580--129659	33	2.4	33	93	0	133	11	20	21	47	1.80
129599--129659	19	3.5	19	74	21	78	14	19	19	45	1.85
129632--129738	20	5.4	20	80	1	99	17	18	25	38	1.93
129653--129742	40	2.2	40	84	0	117	20	16	26	36	1.93
130087--130147	21	3.0	20	73	7	68	22	42	13	21	1.87
130084--130172	39	2.2	42	86	6	130	22	40	15	21	1.91

Tables:   1   2   3   4   5