genome.fa.s7861.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007861.1 Hibiscus syriacus cultivar Beakdansim tig00110226_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  673920

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488306--488348	22	2.0	22	90	0	68	51	11	2	34	1.51
488195--488567	133	2.8	133	87	7	449	52	13	0	34	1.45
488362--488410	22	2.2	21	79	10	53	53	12	0	34	1.39
488364--488513	80	1.9	80	97	0	282	52	14	0	32	1.46
488415--488489	22	3.2	23	71	17	73	54	16	1	28	1.50
488461--488612	32	5.4	32	70	28	155	53	11	0	34	1.36
488444--488612	54	3.1	54	97	0	311	53	11	0	34	1.41
488493--488535	22	2.0	22	100	0	86	51	13	0	34	1.42
488495--488543	22	2.2	22	88	3	71	55	14	0	30	1.40
488545--488589	22	2.1	22	91	4	74	55	11	0	33	1.35
488550--488598	22	2.2	22	85	7	64	59	12	0	28	1.34
488592--488724	15	8.5	15	83	11	151	50	2	0	47	1.13
488591--488724	45	2.8	45	84	8	171	50	2	0	47	1.13
492059--492124	26	2.5	26	100	0	132	28	22	24	24	1.99
494812--494891	22	3.6	22	77	5	90	25	23	26	25	2.00
494813--494891	21	3.6	22	79	5	88	25	24	25	25	2.00
500632--500678	19	2.5	19	86	10	62	31	19	23	25	1.98
500693--500778	45	1.9	45	95	0	154	26	17	27	27	1.98
500740--500779	19	2.1	19	85	0	53	27	15	27	30	1.96
504430--504473	22	2.0	22	95	0	79	20	45	15	18	1.85
504741--504799	20	3.0	20	87	0	73	15	18	22	44	1.87
506111--506158	18	2.7	18	93	0	87	27	45	12	14	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506594--506636	16	2.6	17	85	7	54	4	2	23	69	1.18
506693--506755	19	3.3	19	80	4	72	39	23	22	14	1.91
506744--506802	14	3.9	14	76	20	64	49	23	16	10	1.77
506728--506818	33	2.8	33	98	0	173	47	21	18	12	1.81
506728--506824	19	5.6	19	70	22	88	45	21	19	13	1.84
506819--506875	14	3.7	14	75	20	60	8	15	24	50	1.72
506814--506892	33	2.4	33	95	2	140	10	20	24	45	1.81
506831--506932	20	5.4	20	80	12	101	11	23	24	40	1.88
506864--506940	20	3.8	20	92	0	127	14	24	23	37	1.92
508774--508812	14	2.8	14	84	0	51	35	0	17	46	1.49
508949--509016	19	3.8	19	85	14	101	47	17	22	13	1.82
509045--509130	20	4.3	20	82	5	120	15	23	23	38	1.92
509023--509110	40	2.4	36	83	12	108	14	22	21	40	1.90
509344--509393	20	2.5	20	80	0	73	22	18	22	38	1.94
510256--510309	24	2.2	24	90	0	81	22	16	20	40	1.91
511423--511502	42	1.9	42	84	0	106	22	17	38	21	1.93
511724--511908	91	2.0	90	90	8	293	47	18	12	22	1.82
512958--513083	62	2.0	62	100	0	252	36	24	20	18	1.95
513651--513762	20	6.1	19	78	15	101	42	20	22	14	1.88
513758--513799	19	2.2	19	86	0	57	4	19	30	45	1.71
513769--513810	19	2.2	19	91	0	66	7	21	26	45	1.77
514362--514455	20	4.7	20	82	2	125	20	20	19	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514362--514455	41	2.3	40	87	1	125	20	20	19	40	1.92
514386--514518	41	3.2	42	77	7	130	29	19	20	30	1.97
514452--514511	20	2.9	21	82	5	77	41	18	21	18	1.90
514445--514517	21	3.5	21	81	3	85	36	19	21	21	1.95
518053--518145	13	7.2	13	77	2	98	70	8	16	4	1.28
518051--518098	25	1.9	25	82	0	60	70	6	18	4	1.25
518054--518145	38	2.4	39	98	1	177	70	8	16	4	1.28
524869--524949	15	5.3	15	78	15	78	62	3	0	33	1.12
525389--525434	2	23.5	2	93	4	76	52	0	0	47	1.00
525474--525510	17	2.2	16	95	4	65	35	0	0	64	0.94
535845--535885	21	1.9	21	85	5	55	53	4	0	41	1.22
536756--536826	30	2.4	30	97	0	133	50	2	4	42	1.36
537878--537924	22	2.1	22	96	0	85	36	2	12	48	1.53
543566--543599	17	1.9	18	88	5	52	64	5	0	29	1.17
544640--544915	20	13.6	20	73	11	150	39	25	17	18	1.92
544701--544912	41	5.2	41	90	1	311	39	25	16	18	1.92
545233--545281	20	2.5	20	86	6	73	34	24	22	18	1.96
545273--545348	33	2.3	34	86	2	109	43	19	21	15	1.88
545264--545348	33	2.5	33	84	1	107	43	18	21	16	1.88
545358--545512	20	8.8	19	67	21	97	12	21	18	47	1.82
545363--545459	33	2.9	34	92	3	160	12	22	18	46	1.82
545358--545545	87	2.2	87	94	0	331	12	22	19	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545397--545512	54	2.2	53	89	3	180	12	21	18	47	1.82
545450--545545	33	2.9	34	84	3	122	13	22	19	43	1.86
545649--545683	14	2.5	14	85	0	52	48	20	0	31	1.50
547055--547147	42	2.2	42	80	3	107	22	16	39	21	1.92
547627--547695	20	3.5	20	95	0	120	39	23	20	17	1.92
547626--547731	40	2.9	37	78	16	121	41	20	21	16	1.90
547743--547769	14	1.9	14	100	0	54	7	14	29	48	1.71
547727--547799	33	2.2	33	87	0	101	10	17	26	45	1.82
547727--547781	19	3.2	18	73	24	55	9	16	29	45	1.78
547790--547837	21	2.6	18	81	18	62	16	20	20	41	1.90
547903--548282	94	4.1	94	92	1	602	47	17	12	22	1.80
549980--550035	20	2.8	20	80	20	80	39	19	25	16	1.91
549971--550094	33	3.5	33	83	7	140	43	19	23	13	1.86
549971--550116	19	8.1	19	72	17	105	43	19	23	13	1.86
550112--550233	20	6.5	19	77	11	83	10	18	20	50	1.77
550162--550233	20	3.5	20	84	5	92	12	16	19	51	1.76
550788--551027	20	11.8	19	75	11	167	18	17	25	38	1.92
550790--551001	40	5.2	40	82	5	212	16	17	25	39	1.91
550790--551004	60	3.5	61	79	5	211	17	17	25	39	1.91
551011--551126	41	2.9	39	75	7	115	21	17	23	37	1.93
551239--551383	75	1.9	74	81	1	173	43	10	17	28	1.82
562161--562262	31	3.4	28	76	16	98	46	7	15	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562161--562264	30	3.5	30	78	13	133	46	7	15	30	1.74
563445--563485	20	2.0	20	86	9	57	34	0	26	39	1.57
565138--565199	19	3.4	18	82	8	65	43	8	17	30	1.78
565151--565222	36	2.0	37	83	8	94	41	9	15	33	1.80
565255--565319	25	2.6	24	83	9	69	52	1	23	23	1.56
565270--565308	18	2.2	18	85	0	51	53	0	23	23	1.46
565649--566122	182	2.6	182	88	0	671	43	13	15	26	1.85
566052--566094	20	2.3	19	88	11	63	51	11	16	20	1.75
568423--568488	33	2.0	33	90	0	105	31	0	45	22	1.53
569119--570835	182	9.5	182	95	1	3017	41	13	17	28	1.86
569119--570835	544	3.2	543	95	1	3070	41	13	17	28	1.86
570971--571133	87	1.9	87	94	2	292	34	14	10	41	1.80
571055--571099	23	2.0	23	86	0	63	37	15	8	37	1.79
572303--572356	18	3.0	18	81	8	65	46	12	9	31	1.74
573891--573936	22	2.1	22	88	8	67	36	17	4	41	1.69
575089--575170	30	2.7	31	72	12	80	32	19	2	45	1.64
576376--576420	22	2.0	22	100	0	90	35	0	13	51	1.41
576446--576504	31	1.9	31	89	0	91	44	10	5	40	1.60
577312--577513	95	2.1	95	92	1	334	41	13	21	23	1.88
577899--578135	45	5.2	45	91	4	318	43	10	21	24	1.85
586120--586181	29	2.2	28	88	8	90	54	16	0	29	1.42
586764--586858	45	2.2	45	84	3	131	45	3	30	21	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590993--591084	26	3.5	26	100	0	184	29	22	23	23	1.99
591598--591622	2	12.5	2	100	0	50	52	0	0	48	1.00
592259--592323	21	3.1	21	84	6	60	30	18	38	12	1.88
597760--597799	21	1.9	21	85	10	55	35	10	2	52	1.48
599722--599788	26	2.6	26	97	0	125	29	22	23	23	1.99
602294--602326	12	2.8	12	95	0	57	45	0	6	48	1.27
603444--603493	16	3.0	16	88	11	82	24	22	12	42	1.87
603444--603495	18	3.0	18	94	5	90	23	25	11	40	1.88
605811--605871	20	2.9	20	85	7	68	18	26	31	24	1.97
613572--613611	21	1.9	21	89	0	62	32	27	15	25	1.95

Tables:   1   2   3   4   5