Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007861.1 Hibiscus syriacus cultivar Beakdansim tig00110226_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  673920

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 505 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
613637--613675
19
2.1
19
95
0
69
20
38
15
25
1.92
615677--615716
21
1.9
21
90
10
64
52
0
10
37
1.35
619549--619628
24
3.5
23
77
14
94
23
26
22
27
2.00
622172--622211
21
1.9
21
90
10
64
32
27
15
25
1.95
622237--622275
19
2.1
19
90
0
60
23
38
12
25
1.90
622172--622381
64
3.2
63
79
8
192
32
25
15
26
1.95
623133--623207
39
1.9
39
83
0
96
36
30
16
17
1.91
623490--623528
21
1.9
20
94
5
69
23
5
7
64
1.40
623760--623886
52
2.4
52
94
2
220
40
16
7
34
1.78
627422--627495
2
37.5
2
94
2
132
48
1
0
50
1.09
635372--635406
18
1.9
18
88
0
52
40
0
2
57
1.14
638173--638330
55
2.9
54
83
6
178
23
23
21
31
1.98
638324--638835
55
9.3
55
86
5
680
28
26
14
30
1.95
638324--638835
165
3.1
164
90
1
781
28
26
14
30
1.95
639757--639837
34
2.2
35
85
10
101
7
16
0
76
1.00
639754--639838
43
2.0
42
82
13
102
7
16
0
76
0.99
643323--643350
8
3.5
8
100
0
56
50
10
0
39
1.37
659129--659170
21
2.0
21
100
0
84
19
4
19
57
1.58
660661--660685
11
2.3
11
100
0
50
8
24
0
68
1.16
661931--661956
3
8.7
3
100
0
52
65
0
0
34
0.93
663492--663518
14
1.9
14
100
0
54
51
7
7
33
1.58
669566--669710
32
4.6
32
87
1
170
30
13
19
36
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
671812--671969
21
7.6
21
86
9
225
31
18
25
24
1.97
671812--671969
42
3.8
42
96
1
291
31
18
25
24
1.97
671812--671989
83
2.1
83
90
2
277
30
20
24
24
1.98

Tables:   1   2   3   4   5

The End!