genome.fa.s7872.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007872.1 Hibiscus syriacus cultivar Beakdansim tig00110247_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  853105

Tables:   1   2   3   4   

This is table  1  of  4  ( 433 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3101--3161	30	2.0	30	96	0	113	27	9	4	57	1.52
11575--11599	2	12.5	2	100	0	50	52	0	0	48	1.00
13475--13499	2	12.5	2	100	0	50	52	0	0	48	1.00
17138--17172	13	2.6	14	90	4	54	48	28	0	22	1.51
26082--26358	140	2.0	139	88	0	410	35	20	5	38	1.75
26317--26364	22	2.2	22	81	7	53	56	16	0	27	1.41
28843--29193	179	2.0	179	94	0	612	41	7	14	37	1.73
29141--29616	44	11.0	43	74	12	300	51	6	16	25	1.68
29130--29484	86	4.1	85	75	13	289	49	6	18	25	1.71
29138--29580	87	5.1	87	73	14	271	51	6	16	25	1.68
29816--30160	170	2.0	172	90	5	543	31	14	11	42	1.81
32196--32308	60	1.9	60	85	3	156	32	21	7	38	1.80
37144--37180	4	9.2	4	93	0	65	48	24	2	24	1.64
45040--45067	14	2.0	14	100	0	56	50	7	0	42	1.30
45940--46507	112	5.1	112	92	1	934	45	14	15	25	1.83
45940--46507	223	2.6	222	92	1	921	45	14	15	25	1.83
46455--46787	162	2.1	162	92	2	553	43	12	15	29	1.82
47247--47294	23	2.1	23	88	0	69	39	18	6	35	1.76
47454--47498	24	1.9	23	86	4	63	35	20	20	24	1.96
51322--51351	10	3.0	10	95	0	51	26	0	0	73	0.84
51364--51394	16	1.9	16	93	0	53	58	6	0	35	1.24
61191--61238	26	1.9	25	84	16	64	39	0	10	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61463--61501	8	4.6	8	81	12	51	15	0	0	84	0.62
61463--61501	13	3.0	13	100	0	78	15	0	0	84	0.62
68070--68110	21	2.0	21	90	0	64	46	4	14	34	1.66
69448--69472	2	12.5	2	100	0	50	52	0	0	48	1.00
76558--76592	11	3.1	11	87	4	52	42	2	0	54	1.15
76980--77038	31	1.9	31	92	0	100	40	6	10	42	1.65
77063--77127	22	3.0	22	100	0	130	50	13	0	35	1.42
77085--77386	54	5.6	54	68	19	184	51	14	0	33	1.45
77053--77237	80	2.4	78	91	3	293	52	14	0	33	1.41
77085--77386	134	2.3	134	97	0	568	51	14	0	33	1.45
77220--77261	22	1.9	22	100	0	84	52	14	2	30	1.54
77221--77269	22	2.2	22	88	3	71	55	14	2	28	1.51
77224--77373	80	1.9	80	98	0	291	52	15	0	31	1.47
77275--77349	22	3.2	23	75	17	82	54	17	0	28	1.43
77318--77431	30	3.5	33	79	14	119	50	6	0	43	1.27
77372--77446	15	5.0	15	95	0	132	49	0	0	50	1.00
78955--79030	2	38.0	2	100	0	152	50	0	0	50	1.00
79485--79548	31	2.1	31	84	0	83	39	14	23	23	1.91
83006--83050	21	2.2	20	88	11	65	42	17	0	40	1.50
90451--90479	11	2.7	11	94	5	51	51	0	0	48	1.00
91429--91457	11	2.5	12	88	11	51	51	0	0	48	1.00
91432--91459	11	2.5	11	100	0	56	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95540--95590	19	2.6	20	90	3	77	43	23	17	15	1.88
95540--95863	20	15.6	20	78	8	177	38	19	24	17	1.93
95644--95863	20	10.4	21	87	5	193	35	18	27	18	1.94
95644--95853	109	2.0	106	88	2	312	35	18	27	18	1.94
95850--95893	20	2.2	20	91	0	70	56	15	15	11	1.66
95971--96031	6	10.5	6	98	1	108	31	52	16	0	1.44
96542--96585	20	2.2	20	91	0	70	11	18	15	54	1.70
96572--96788	20	10.4	20	85	4	164	18	26	18	35	1.94
96574--96767	40	4.7	40	80	7	199	19	26	18	36	1.94
96594--96788	86	2.3	83	85	5	243	18	27	17	35	1.94
96572--96892	20	15.6	20	78	7	153	17	23	19	38	1.93
96842--96892	19	2.6	20	90	3	77	15	17	23	43	1.88
99473--99581	38	3.0	37	72	13	100	33	25	9	31	1.87
101054--101113	30	2.0	31	86	3	86	28	8	10	53	1.63
102768--102812	19	2.5	18	85	7	56	73	2	20	4	1.11
105302--105361	30	2.0	31	86	3	86	28	8	10	53	1.63
106257--106307	20	2.6	20	90	3	77	35	15	5	43	1.71
106728--106772	19	2.3	20	85	14	60	24	11	0	64	1.26
110888--111215	4	82.0	4	88	0	269	50	11	1	36	1.47
110884--111215	12	28.0	12	85	2	339	50	12	1	36	1.48
111560--111621	29	2.1	30	93	3	108	32	22	11	33	1.90
111806--111843	12	3.2	12	88	0	58	52	0	7	39	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111637--111869	116	2.0	117	87	5	337	50	7	7	35	1.58
111922--111978	24	2.4	24	82	5	62	35	7	5	52	1.51
114836--114888	27	1.9	28	84	3	72	33	11	13	41	1.80
114976--115074	29	3.3	30	81	10	114	40	15	8	36	1.76
120931--120963	5	6.6	5	100	0	66	39	0	0	60	0.97
121013--121057	3	15.0	3	100	0	90	66	0	0	33	0.92
121569--121693	60	2.1	60	82	7	148	39	16	13	30	1.88
123035--123062	2	14.0	2	100	0	56	50	0	0	50	1.00
123522--123561	2	20.0	2	100	0	80	50	0	0	50	1.00
136600--136746	74	2.0	74	87	0	213	38	9	17	34	1.83
139586--139659	13	5.3	13	81	15	94	16	47	21	14	1.82
139582--139653	31	2.3	31	97	0	135	16	50	20	12	1.78
139599--139640	18	2.3	18	95	0	75	16	50	21	11	1.77
139648--139681	15	2.3	15	94	0	59	17	35	23	23	1.95
140967--141002	18	2.0	18	88	0	54	52	0	16	30	1.44
142150--142223	23	3.2	23	83	9	96	24	17	21	36	1.95
142156--142230	24	3.2	24	88	1	116	25	17	21	36	1.95
144420--144493	13	5.3	13	81	15	94	16	47	21	14	1.82
144416--144487	31	2.3	31	97	0	135	16	50	20	12	1.78
144433--144474	18	2.3	18	95	0	75	16	50	21	11	1.77
144482--144515	15	2.3	15	94	0	59	17	35	23	23	1.95
145802--145837	18	2.0	18	88	0	54	52	0	16	30	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146984--147057	23	3.2	23	83	9	96	24	17	21	36	1.95
146990--147064	24	3.2	24	88	1	116	25	17	21	36	1.95
151577--151615	3	13.0	3	100	0	78	66	0	33	0	0.92
153650--153676	14	1.9	14	100	0	54	33	29	0	37	1.58
157975--158064	47	1.9	47	86	0	126	25	25	12	36	1.91
162614--162650	2	18.5	2	100	0	74	48	0	0	51	1.00
162907--162981	33	2.3	32	86	4	98	46	12	14	26	1.79
163952--164007	29	1.9	29	85	7	78	44	14	10	30	1.79
169618--169653	18	2.1	17	89	5	54	41	8	0	50	1.33
173295--173358	32	2.0	33	87	3	94	40	39	7	12	1.72
177984--178081	49	2.0	49	97	0	187	21	34	17	26	1.95
179540--179617	31	2.6	31	80	8	81	41	6	8	43	1.62
179528--179632	28	3.6	28	76	8	93	40	9	8	40	1.68
181592--181638	22	2.1	21	85	14	60	36	12	4	46	1.62
181661--181686	4	6.5	4	100	0	52	76	0	0	23	0.78
181805--181852	16	2.9	16	78	3	51	66	0	4	29	1.10
194228--194278	23	2.2	23	85	0	66	60	7	13	17	1.56
194485--194536	15	3.5	15	78	5	70	42	7	17	32	1.77
194522--194568	20	2.3	20	96	0	85	44	4	17	34	1.68
194888--194949	25	2.6	23	75	24	65	54	1	0	43	1.09
194891--194994	28	3.6	28	80	16	97	51	1	0	46	1.12
194891--195082	30	6.8	26	70	22	81	51	1	0	47	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195030--195082	12	4.7	12	73	20	51	50	0	0	49	1.00
195005--195056	16	3.2	16	74	15	54	57	0	0	42	0.98
195006--195082	23	3.3	23	79	13	70	54	0	0	45	0.99
195034--195084	21	2.3	23	86	10	70	49	0	0	50	1.00
195269--195364	49	2.0	49	87	0	138	48	16	12	21	1.79
198623--198784	59	2.7	60	78	10	190	46	4	16	32	1.69
198657--198764	28	3.7	28	70	12	92	48	4	12	34	1.62
201519--202083	166	3.5	161	88	3	753	34	21	17	25	1.95
201603--202113	166	3.1	166	91	1	787	33	22	17	25	1.96
202570--202594	3	8.3	3	100	0	50	64	0	36	0	0.94

Tables:   1   2   3   4