genome.fa.s7872.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007872.1 Hibiscus syriacus cultivar Beakdansim tig00110247_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  853105

Tables:   1   2   3   4   

This is table  2  of  4  ( 433 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204911--205095	60	3.1	60	77	4	178	35	6	26	31	1.82
206734--208707	4	498.5	4	87	5	2220	45	27	4	22	1.72
207819--208041	2	116.5	2	85	8	313	49	47	0	2	1.13
208713--208738	8	3.2	8	100	0	52	11	38	38	11	1.78
208713--208747	16	2.2	16	89	0	52	11	40	40	8	1.72
210277--210302	2	13.0	2	100	0	52	50	0	0	50	1.00
211341--211387	19	2.3	21	89	7	71	40	0	2	57	1.11
215073--215102	2	15.0	2	100	0	60	50	0	0	50	1.00
217219--217255	15	2.5	15	95	0	65	37	40	2	18	1.65
222722--222752	2	16.0	2	93	6	55	48	0	0	51	1.00
223689--223719	6	5.2	6	100	0	62	16	0	19	64	1.29
231111--231149	19	2.1	19	95	0	69	46	25	7	20	1.77
234087--234586	202	2.5	204	93	1	826	23	21	23	32	1.98
238092--238179	23	4.0	22	79	8	81	19	13	12	54	1.70
245502--245549	21	2.3	20	75	10	51	27	18	18	35	1.95
245585--245690	20	5.2	20	82	6	133	28	28	21	21	1.99
245564--245690	61	2.1	61	93	0	218	29	28	22	20	1.98
245564--245720	61	2.6	61	87	0	179	30	25	21	22	1.99
245744--245809	22	3.0	22	86	0	96	19	39	16	24	1.92
245744--245820	22	3.3	24	78	14	81	19	40	14	25	1.89
246197--246249	20	2.7	20	81	0	61	16	13	18	50	1.77
246214--246259	20	2.3	20	92	0	74	17	10	17	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248264--248365	23	4.4	23	89	0	141	27	25	27	19	1.99
249036--249076	21	2.0	21	90	0	64	17	21	29	31	1.96
250261--250420	74	2.2	74	89	0	248	36	22	20	20	1.95
250261--250420	20	8.6	20	66	18	94	36	22	20	20	1.95
250426--250467	14	3.0	14	92	0	66	9	21	23	45	1.81
250495--250533	20	2.0	20	100	0	78	15	12	25	46	1.81
251018--251122	21	5.0	21	77	0	111	20	36	19	24	1.95
251014--251125	42	2.7	42	80	2	127	19	37	18	24	1.94
252501--252566	30	2.2	30	97	0	123	30	1	13	54	1.48
252716--253033	20	16.9	20	78	12	289	21	20	22	35	1.96
252677--253030	54	6.4	54	76	10	277	21	20	22	36	1.95
252736--252911	34	4.8	35	76	13	160	20	20	23	35	1.96
252733--253025	74	4.0	73	80	5	338	20	20	22	36	1.95
255277--255303	14	1.9	14	100	0	54	7	18	29	44	1.77
256377--256463	20	4.3	20	75	8	86	21	19	26	32	1.97
256390--256481	41	2.2	41	88	3	141	19	21	26	32	1.97
256414--256481	21	3.3	21	72	12	68	17	22	26	33	1.96
256510--256554	21	2.1	21	84	8	56	44	17	17	20	1.87
256591--256627	19	1.9	19	88	0	56	24	16	27	32	1.96
258995--259087	28	3.3	28	80	4	107	45	39	0	15	1.46
260227--260267	20	2.2	20	82	8	50	48	0	4	46	1.23
262119--262226	29	3.7	29	89	0	144	18	39	30	11	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263404--263570	79	2.1	80	83	8	216	45	14	12	27	1.81
263431--263570	40	3.5	40	73	12	135	47	15	12	25	1.79
266195--266250	27	2.1	27	93	0	94	12	14	25	48	1.78
267577--267615	3	13.0	3	100	0	78	33	0	0	66	0.92
268397--268422	2	13.0	2	100	0	52	50	0	0	50	1.00
269175--269234	31	1.9	31	100	0	120	26	26	10	36	1.88
269801--269838	15	2.6	15	87	4	51	55	2	0	42	1.14
282537--283713	282	4.2	282	83	6	1332	37	22	12	27	1.90
284943--284976	16	2.1	16	88	0	50	50	0	2	47	1.16
285021--285054	16	2.0	18	88	11	54	26	2	5	64	1.30
285525--285772	130	1.9	130	93	0	424	35	12	15	36	1.86
286170--286245	35	2.2	35	92	0	125	35	1	23	39	1.63
286569--286609	21	2.0	21	90	0	64	41	9	0	48	1.36
288869--288933	21	3.1	21	71	4	60	23	23	29	24	1.99
302348--302584	95	2.5	96	93	2	397	46	2	9	40	1.52
303020--303133	59	1.9	59	85	3	158	32	13	14	40	1.84
308985--309037	22	2.4	22	100	0	106	49	3	3	43	1.38
310125--310167	21	2.0	21	100	0	86	34	23	18	23	1.96
314433--314504	31	2.4	30	81	4	83	26	31	9	31	1.89
314607--314755	35	4.3	35	89	0	181	44	20	0	34	1.56
314749--314823	35	2.1	35	82	4	89	34	0	21	44	1.53
316919--317003	28	3.0	28	87	3	116	43	21	10	24	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319076--319239	80	2.0	80	97	0	310	35	17	11	35	1.86
320316--320531	108	2.0	106	87	6	310	47	19	8	23	1.77
320944--320978	18	2.0	18	88	5	54	45	0	0	54	0.99
321757--321797	21	1.9	21	85	5	55	46	4	0	48	1.23
323401--323441	21	2.0	21	85	9	57	26	17	17	39	1.91
323624--323677	26	2.1	26	86	10	76	38	5	0	55	1.23
325629--326224	293	2.1	287	86	3	827	24	14	18	42	1.87
333467--333492	12	2.2	12	100	0	52	84	0	0	15	0.62
346965--347008	24	1.9	24	86	9	65	18	4	25	52	1.64
347003--347063	26	2.3	26	86	5	79	8	11	45	34	1.70
351916--352579	332	2.0	332	85	4	903	26	16	22	35	1.94
354955--354979	12	2.1	12	100	0	50	28	16	32	24	1.96
364782--364963	56	3.4	54	84	8	244	29	17	14	39	1.89
364806--364961	51	3.0	51	84	9	213	30	17	12	39	1.87
368867--368904	20	2.0	20	84	5	51	63	2	15	18	1.43
369039--369088	16	2.9	17	73	8	57	50	0	2	48	1.12
371729--371769	21	2.0	21	85	4	57	39	7	0	53	1.29
372421--372539	37	3.2	37	74	8	116	20	12	34	32	1.90
373734--373774	21	2.0	21	90	0	64	36	12	7	43	1.70
373746--373806	32	1.9	32	89	0	95	34	11	9	44	1.74
373722--373822	53	1.9	53	87	4	150	35	10	7	45	1.69
374573--374649	31	2.5	31	87	4	104	35	9	16	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374573--374660	29	3.0	29	84	3	113	34	9	15	40	1.79
378088--378127	21	1.9	21	84	0	53	37	10	15	37	1.80
388618--388730	42	2.8	41	84	5	140	32	27	13	26	1.93
388617--388812	20	9.7	21	76	9	122	28	27	15	29	1.96
388741--388869	20	6.4	20	77	0	114	28	26	15	29	1.96
388739--388869	40	3.3	40	78	0	145	28	26	15	29	1.96
388716--388870	60	2.6	60	84	0	184	27	27	14	30	1.95
388888--388951	20	3.2	20	84	4	85	29	15	25	29	1.96
402315--402555	119	2.0	119	100	0	482	37	12	16	33	1.86
405171--405267	50	1.9	50	89	0	149	13	18	15	52	1.74
405209--405245	18	2.1	18	100	0	74	10	21	18	48	1.78
407661--408043	195	2.0	196	86	3	540	31	13	18	36	1.89
408478--408552	19	3.6	20	76	16	73	40	5	2	52	1.38
409917--409981	22	3.0	22	79	4	69	58	7	15	18	1.60
410513--410556	23	2.0	21	83	16	54	36	0	11	52	1.38
411303--411337	14	2.5	14	85	0	52	68	0	0	31	0.90
412852--412993	60	2.4	60	83	5	164	37	15	14	33	1.87
419358--419474	60	2.0	60	84	3	155	33	19	5	41	1.74
421562--421623	30	2.1	30	87	6	90	27	14	8	50	1.71
422647--422705	4	15.0	4	96	3	111	74	0	25	0	0.82
424404--424773	102	3.6	100	90	2	515	25	35	13	25	1.93
424404--424773	204	1.8	204	88	0	569	25	35	13	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442190--442223	10	3.4	10	87	0	50	20	5	0	73	1.04
450293--450339	8	5.6	8	90	9	76	87	12	0	0	0.55
450293--450339	17	2.8	16	90	9	76	87	12	0	0	0.55
451166--451924	105	7.2	105	92	1	1132	33	26	17	21	1.96
453065--453121	23	2.5	23	81	13	64	28	3	0	68	1.06
459730--459802	21	3.4	21	75	3	65	47	24	1	26	1.60
461574--461697	59	2.1	58	83	3	149	32	16	16	34	1.91
462553--462724	59	2.9	59	90	1	254	29	12	19	38	1.89
466193--466226	16	2.0	18	88	11	54	26	2	5	64	1.30
466693--466939	129	1.9	130	92	0	415	35	12	14	36	1.85

Tables:   1   2   3   4