genome.fa.s7872.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007872.1 Hibiscus syriacus cultivar Beakdansim tig00110247_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  853105

Tables:   1   2   3   4   

This is table  3  of  4  ( 433 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467332--467407	35	2.2	35	92	0	125	35	1	23	39	1.63
468073--468116	21	2.2	20	83	4	52	56	2	0	40	1.11
468052--468438	185	2.1	181	90	2	596	44	2	8	44	1.46
470188--470255	34	2.0	34	94	0	118	23	27	16	32	1.96
475684--475747	2	32.0	2	100	0	128	50	0	0	50	1.00
476429--476487	21	2.7	22	73	5	66	23	22	18	35	1.96
476497--476578	20	4.2	20	96	1	148	19	29	24	26	1.98
477403--477456	24	2.2	24	93	0	90	20	18	20	40	1.91
478903--478970	20	3.5	20	75	2	66	47	23	14	14	1.82
479561--479664	20	5.2	20	86	0	136	24	23	25	26	2.00
479633--479684	20	2.6	20	87	6	70	19	23	21	36	1.95
481461--481524	31	2.1	31	84	0	83	34	14	25	26	1.94
482874--482911	17	2.2	18	95	4	69	34	21	0	44	1.52
488427--488460	2	17.0	2	100	0	68	50	0	0	50	1.00
491807--491851	21	2.1	21	91	0	72	35	4	20	40	1.72
491808--491856	21	2.4	20	86	3	62	32	4	18	44	1.68
501880--501933	27	2.0	27	100	0	108	40	7	22	29	1.81
504134--504162	2	15.0	2	92	7	51	51	0	0	48	1.00
505910--505938	2	14.5	2	100	0	58	48	0	0	51	1.00
507057--507106	23	2.2	23	81	0	55	36	24	22	18	1.95
507246--507347	31	3.2	31	75	5	123	40	20	5	33	1.77
507276--507365	16	5.6	16	65	10	58	44	20	6	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507274--507372	33	3.1	33	73	5	121	42	20	6	31	1.76
507243--507372	64	2.0	64	100	0	260	40	20	6	33	1.77
507246--507360	31	3.6	31	75	4	122	41	20	6	31	1.77
507275--507377	31	3.3	31	75	5	125	41	21	5	31	1.76
508519--508580	32	1.9	32	100	0	124	29	29	4	37	1.78
509325--509396	24	3.1	24	86	6	103	31	22	20	25	1.98
509313--509396	24	3.7	23	84	4	98	30	21	21	26	1.98
511388--511419	6	5.3	6	100	0	64	0	0	46	53	1.00
513361--513424	27	2.4	27	100	0	128	28	15	14	42	1.86
517490--517596	36	3.0	36	63	28	84	14	17	16	50	1.78
517908--517995	41	2.1	41	91	0	140	26	26	28	19	1.99
519257--519302	8	6.4	7	90	9	51	47	0	0	52	1.00
519262--519303	2	21.5	2	95	4	77	50	0	0	50	1.00
519348--519423	30	2.6	30	82	2	100	21	34	9	35	1.85
527828--527916	4	22.2	4	97	0	169	24	1	25	48	1.58
528960--529072	55	2.1	55	100	0	226	43	7	11	38	1.68
547203--547229	14	1.9	14	100	0	54	29	3	0	66	1.09
547926--548040	60	1.9	60	83	0	149	33	13	16	37	1.87
548608--548947	164	2.1	162	97	1	637	34	10	10	44	1.75
565544--565578	18	1.9	18	100	0	70	25	34	22	17	1.96
567156--567192	14	2.7	14	91	4	58	32	18	29	18	1.96
570434--570480	23	2.0	23	91	0	76	44	4	29	21	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575339--575365	2	13.5	2	100	0	54	48	0	0	51	1.00
585865--585894	15	2.0	15	100	0	60	33	6	13	46	1.69
591970--592008	20	1.9	21	94	5	71	20	41	25	12	1.88
591971--592028	21	2.8	21	82	7	57	24	39	24	12	1.89
594282--594316	11	3.0	11	84	15	52	17	0	31	51	1.45
594278--594311	13	2.6	13	95	0	59	17	0	35	47	1.48
594303--594335	16	2.1	16	100	0	66	36	0	18	45	1.49
594437--594467	15	2.1	15	100	0	62	32	6	12	48	1.67
596432--596511	41	2.0	41	87	0	115	40	21	7	31	1.81
596456--596611	82	1.9	82	85	5	217	34	23	10	31	1.89
596478--596611	41	3.3	41	91	0	196	34	23	11	30	1.90
598330--598362	2	16.5	2	100	0	66	51	0	0	48	1.00
604704--604755	27	2.0	27	88	3	79	19	23	3	53	1.61
610083--610125	21	2.0	21	90	0	68	30	27	2	39	1.69
612701--612839	59	2.3	58	78	7	145	51	7	10	31	1.63
613041--613080	17	2.4	17	91	0	62	32	2	0	65	1.06
613968--613999	15	2.2	15	94	5	57	65	3	0	31	1.08
618041--618075	16	2.2	16	89	0	52	25	2	0	71	1.00
621121--621461	43	7.4	42	66	21	157	22	17	25	34	1.96
621164--621421	51	5.4	51	67	17	219	23	17	25	32	1.96
621095--621678	94	6.0	94	94	2	830	23	17	25	33	1.96
621367--621678	105	3.0	105	95	1	554	24	17	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622514--622552	13	3.0	13	92	7	62	0	20	0	79	0.73
631957--632000	20	2.2	20	88	8	63	72	2	6	18	1.17
637242--637358	59	2.0	60	87	1	173	36	7	10	45	1.67
638983--639021	17	2.4	17	95	4	71	51	5	0	43	1.24
644432--644498	24	2.8	24	95	0	116	32	17	28	20	1.96
651717--651756	2	20.0	2	100	0	80	50	0	0	50	1.00
653069--653101	15	2.1	16	88	5	50	51	15	24	9	1.72
663010--663037	2	14.0	2	100	0	56	50	0	0	50	1.00
666635--666703	28	2.5	27	74	4	66	44	8	2	43	1.50
671135--671159	13	1.9	13	100	0	50	48	8	12	32	1.69
674380--674423	18	2.4	18	82	14	54	25	2	56	15	1.51
674494--674622	48	2.7	47	83	7	152	13	10	54	21	1.69
675012--675063	21	2.5	21	93	0	86	38	7	11	42	1.70
675808--675867	23	2.5	24	81	10	79	51	8	21	18	1.72
676366--676419	6	9.5	6	97	2	87	29	53	16	0	1.43
676420--676447	5	5.6	5	100	0	56	39	21	39	0	1.54
677048--677125	42	1.9	41	89	5	122	28	24	23	24	2.00
677045--677116	21	3.5	21	80	10	87	27	25	23	23	2.00
677137--677248	21	5.4	21	78	10	113	24	21	24	30	1.99
677109--677234	62	2.0	62	93	0	216	26	20	20	32	1.97
677845--677885	18	2.2	19	86	4	57	46	0	0	53	1.00
681748--681794	21	2.3	20	85	7	67	2	21	2	74	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
683679--683771	29	3.2	29	93	0	159	46	11	8	33	1.71
683835--683911	29	2.6	29	89	2	109	49	11	5	33	1.62
683971--684035	29	2.2	29	86	2	85	46	13	7	32	1.72
683992--684048	29	2.0	29	89	0	87	47	10	8	33	1.69
683715--684050	137	2.4	138	85	3	453	41	13	10	33	1.79
692279--692346	31	2.2	31	86	0	91	44	8	23	23	1.81
692435--692469	18	1.9	18	100	0	70	45	20	5	28	1.73
697879--697918	19	2.1	19	85	4	53	25	22	15	37	1.93
698559--698598	21	2.0	20	90	5	62	45	15	12	27	1.82
700095--700255	57	2.8	57	88	0	250	27	16	22	33	1.96
700294--700337	20	2.2	20	95	0	79	22	15	22	38	1.92
701979--702024	20	2.3	20	96	0	83	32	15	19	32	1.93
702055--702135	20	4.0	20	70	3	72	23	17	20	38	1.93
701933--702092	77	2.1	78	83	5	200	28	15	20	35	1.93
702896--702964	23	3.0	23	84	0	84	27	23	27	21	1.99
704587--704662	20	3.8	20	81	6	82	43	18	15	22	1.88
704836--704873	20	1.9	20	94	0	67	47	15	13	23	1.81
704869--705052	57	3.2	57	86	2	253	35	20	15	27	1.93
705059--705120	20	3.0	20	76	4	79	25	11	22	40	1.87
705047--705109	20	3.1	20	77	4	72	25	9	26	38	1.87
705047--705133	41	2.1	41	91	0	138	25	10	25	39	1.87
724315--724347	16	2.0	17	88	5	50	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724355--724418	12	5.3	12	74	12	60	35	1	0	62	1.05
724329--724421	24	3.9	24	76	16	79	30	2	1	66	1.10
724444--724610	47	3.6	47	85	5	225	25	0	21	52	1.52
724445--724609	69	2.4	69	84	8	212	26	0	20	52	1.51
724576--724648	38	1.9	38	94	0	128	26	1	21	50	1.57
724444--724648	22	9.3	22	76	10	188	25	0	21	51	1.54
724764--724796	17	1.9	17	88	11	50	30	9	0	60	1.27
726184--726260	31	2.5	31	86	2	109	48	14	11	25	1.78
726184--726250	32	2.1	32	91	2	109	50	13	13	22	1.76
728672--728754	23	3.6	23	85	4	96	55	16	16	10	1.69

Tables:   1   2   3   4