genome.fa.s7872.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007872.1 Hibiscus syriacus cultivar Beakdansim tig00110247_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  853105

Tables:   1   2   3   4   

This is table  4  of  4  ( 433 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729129--729736	225	2.7	223	84	2	734	41	12	12	33	1.81
729801--729859	23	2.6	23	86	5	75	40	5	18	35	1.73
729847--730028	74	2.4	75	85	0	249	35	12	8	42	1.74
730323--730352	2	15.5	2	93	6	53	50	0	0	50	1.00
734513--734580	31	2.2	31	86	0	91	23	14	14	47	1.82
739790--739827	16	2.3	17	81	4	51	60	7	5	26	1.46
740059--740198	30	4.6	30	72	7	111	60	8	11	20	1.57
742249--742321	20	3.7	20	94	0	110	28	21	32	16	1.95
742356--742398	22	1.9	23	90	4	70	20	20	32	25	1.97
742992--743126	43	3.1	43	65	8	103	26	16	30	26	1.97
742936--743131	86	2.3	86	92	0	320	26	16	27	29	1.97
744275--744306	14	2.3	14	94	0	55	21	0	31	46	1.52
748296--748406	45	2.6	43	82	8	145	19	53	8	18	1.70
748296--748422	45	2.9	46	77	6	138	20	54	7	18	1.66
748297--748430	42	3.1	42	78	10	144	20	54	6	18	1.66
748629--748668	21	1.9	21	84	0	53	30	52	2	15	1.55
758437--758536	30	3.1	30	64	20	74	14	17	20	49	1.80
760255--760306	23	2.3	22	90	6	77	44	19	1	34	1.62
760265--760327	23	2.7	23	90	0	90	38	19	6	36	1.77
760731--760817	39	2.2	39	93	0	147	17	13	21	47	1.82
761076--761112	18	2.1	18	89	0	56	51	10	5	32	1.60
761361--761411	25	2.0	25	92	0	84	39	19	7	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761678--761729	23	2.3	22	90	6	77	44	19	1	34	1.62
761688--761750	23	2.7	23	90	0	90	38	19	6	36	1.77
762109--762160	23	2.3	22	90	6	77	44	19	1	34	1.62
762119--762181	23	2.7	23	90	0	90	38	19	6	36	1.77
764752--765095	184	1.9	184	93	0	589	33	16	13	35	1.89
766561--766623	3	21.0	3	76	0	63	23	33	6	36	1.80
766561--766635	12	6.2	12	88	0	78	22	33	8	36	1.84
766589--766635	24	2.0	24	100	0	94	17	34	10	38	1.84
766565--766638	6	12.3	6	80	0	58	20	33	8	37	1.82
768093--769454	199	6.9	199	97	1	2517	30	16	15	36	1.90
768093--769454	397	3.4	398	96	1	2517	30	16	15	36	1.90
769576--769620	19	2.4	19	77	3	56	57	6	2	33	1.37
771415--771480	33	2.0	33	87	0	96	24	45	1	28	1.62
773785--773830	19	2.4	19	79	13	58	19	17	10	52	1.74
773954--773995	20	2.1	20	91	8	68	16	19	11	52	1.74
774060--774506	228	2.0	226	94	1	779	39	7	8	44	1.62
775649--775694	24	1.9	24	81	0	56	58	6	2	32	1.36
775816--775890	23	3.6	22	72	22	65	33	5	2	58	1.34
776315--776478	60	2.7	59	78	8	136	22	13	17	46	1.83
777871--777918	17	2.8	18	78	9	55	66	4	8	20	1.35
777907--778080	4	39.8	4	70	17	57	68	3	6	21	1.26
777906--777996	14	6.6	14	70	17	66	74	3	4	17	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
777889--778007	35	3.4	35	80	10	111	72	3	6	17	1.21
777890--777949	17	3.4	17	76	13	59	76	3	5	15	1.08
777906--777963	5	11.6	5	72	20	50	79	1	3	15	0.95
778210--778249	3	14.0	3	80	19	50	65	0	0	35	0.93
778311--778348	19	2.0	19	89	0	58	68	0	7	23	1.16
778344--778409	2	34.5	2	82	8	75	50	0	3	46	1.16
778430--778491	26	2.2	29	83	11	94	53	0	4	41	1.22
778581--778673	3	32.0	3	73	21	65	64	1	3	31	1.16
778581--778673	11	8.0	12	70	21	65	64	1	3	31	1.16
778678--778715	19	2.0	19	89	0	58	63	0	5	31	1.17
778593--778713	50	2.5	49	78	15	126	65	1	4	28	1.21
778819--778845	2	13.5	2	100	0	54	51	0	0	48	1.00
778096--778777	372	1.8	370	86	6	970	53	4	9	31	1.54
792147--792308	5	32.2	5	66	20	54	70	3	6	19	1.22
792145--792192	17	2.8	18	81	9	64	68	4	8	18	1.31
792180--792308	9	13.2	10	68	17	58	72	2	5	20	1.16
792181--792340	14	11.5	14	65	14	73	70	3	5	20	1.22
792190--792237	24	1.9	25	83	8	62	79	2	4	14	0.98
792566--792606	20	2.0	21	85	4	57	68	0	7	24	1.15
792600--792783	2	95.5	2	74	13	127	52	1	3	42	1.26
792880--792969	3	31.0	3	72	22	68	64	0	3	32	1.10
797766--797790	3	8.3	3	100	0	50	0	0	32	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
804049--804184	75	1.9	68	85	12	186	22	18	15	43	1.87
811073--811518	41	10.8	42	84	8	524	28	21	18	32	1.97
811073--811518	83	5.4	83	89	1	610	28	21	18	32	1.97
817459--817644	43	4.4	43	85	2	234	27	22	22	27	1.99
831029--831072	16	2.7	16	86	10	54	29	2	25	43	1.67
837728--837770	21	2.0	21	81	0	50	27	27	25	18	1.98
841144--842437	105	12.4	105	92	2	2056	22	18	26	32	1.97

Tables:   1   2   3   4

The End!