genome.fa.s7891.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007891.1 Hibiscus syriacus cultivar Beakdansim tig00110273_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  893409

Tables:   1   2   3   4   

This is table  2  of  4  ( 423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181226--181312	34	2.4	36	80	14	83	79	0	18	2	0.84
181225--181312	25	3.5	25	80	13	85	78	0	19	2	0.86
184008--184114	44	2.4	44	88	1	160	27	16	19	36	1.93
184004--184293	89	3.2	89	74	6	264	26	16	17	40	1.90
184004--184297	45	6.6	45	77	3	272	26	15	17	40	1.90
184060--184311	134	1.9	134	82	1	317	25	15	17	42	1.88
185314--185863	138	4.0	136	76	7	427	28	12	14	45	1.81
189172--189217	24	1.9	24	86	0	65	28	21	17	32	1.96
191325--191381	27	2.0	27	83	10	69	24	15	0	59	1.36
196787--196820	14	2.4	14	85	0	50	20	55	17	5	1.62
203864--203907	9	4.6	9	78	15	52	13	20	29	36	1.91
217733--217778	18	2.4	19	82	10	58	34	21	8	34	1.84
217747--217795	19	2.5	20	87	6	66	40	18	4	36	1.70
218007--218064	18	3.1	18	83	11	71	50	8	12	29	1.69
238363--238392	14	2.1	14	100	0	60	43	23	6	26	1.78
240170--240214	17	2.6	17	89	0	72	31	22	11	35	1.89
240203--240239	18	2.1	18	94	0	65	29	29	5	35	1.80
242191--242294	42	2.5	41	79	11	115	30	21	22	25	1.98
242166--243240	228	4.6	228	77	10	959	33	18	16	32	1.93
242873--242925	20	2.7	19	85	8	70	28	16	26	28	1.97
242901--242993	42	2.2	42	80	1	98	31	18	17	33	1.94
243140--243240	42	2.4	42	79	9	118	30	22	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248078--248130	19	2.7	19	94	2	88	52	15	13	18	1.74
248074--248137	6	10.2	6	86	8	76	51	15	14	18	1.76
253691--253715	13	1.9	13	100	0	50	36	32	8	24	1.84
263582--263627	16	2.6	19	80	13	62	52	13	0	34	1.40
269084--269168	33	2.6	31	82	14	93	74	2	10	12	1.17
269120--269171	25	2.1	25	82	7	61	76	1	7	13	1.07
288694--288760	31	2.2	31	97	0	125	43	7	7	41	1.61
288813--288985	87	2.0	87	90	2	276	35	12	10	41	1.77
291152--291192	20	2.1	20	90	4	66	43	4	9	41	1.59
292114--292164	21	2.4	22	78	15	63	54	7	9	27	1.60
293629--293704	25	3.0	25	100	0	152	40	3	19	35	1.70
296037--296084	23	2.1	23	88	7	71	45	0	2	52	1.12
306303--306478	85	2.1	85	82	6	214	31	17	19	30	1.95
307408--307442	12	2.9	12	100	0	70	17	22	0	60	1.37
309977--310023	12	3.9	12	77	8	51	74	10	2	12	1.16
311732--311757	13	2.0	13	100	0	52	61	0	0	38	0.96
312884--312914	15	2.0	16	93	6	55	19	41	6	32	1.77
313332--313375	20	2.1	22	83	8	56	36	0	27	36	1.57
314387--314526	60	2.4	57	83	7	156	31	23	15	29	1.95
329738--329771	2	17.0	2	93	0	59	47	0	0	52	1.00
331168--331220	3	18.0	3	83	11	65	67	1	1	28	1.11
331351--331975	123	5.1	123	85	3	816	26	17	16	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341198--341412	117	1.8	117	86	4	308	37	15	21	25	1.93
341861--341907	3	15.7	3	90	0	76	36	2	0	61	1.08
344928--345003	21	3.6	21	76	13	84	25	13	30	31	1.93
351019--351053	18	1.9	18	94	0	61	31	14	25	28	1.95
355625--355690	30	2.3	27	79	7	69	48	7	3	40	1.47
355688--355778	29	3.1	29	84	6	121	51	12	5	30	1.61
355621--355766	75	1.9	75	83	4	186	49	11	4	34	1.58
359722--359773	24	2.2	24	85	0	68	21	0	30	48	1.51
359728--359776	24	2.0	24	92	0	80	18	0	38	42	1.50
369332--369403	34	2.2	31	85	11	92	73	4	16	5	1.18
375335--375373	20	2.0	20	85	10	53	51	17	5	25	1.66
382502--382616	25	4.5	26	78	14	114	51	10	11	26	1.70
382486--382568	27	3.2	26	77	11	89	49	8	13	28	1.71
382486--382626	25	5.5	24	76	10	111	53	9	9	26	1.64
382486--382624	51	2.7	51	82	8	160	53	9	10	27	1.65
385538--385600	8	8.0	8	72	10	58	31	0	33	34	1.58
385646--386721	341	3.2	335	78	5	1085	29	16	20	34	1.94
385631--386731	169	6.5	170	78	4	984	29	16	19	34	1.94
387568--387652	18	4.7	18	80	0	80	31	3	14	50	1.59
387572--387672	18	5.6	18	82	2	69	31	4	11	51	1.60
387568--387673	12	8.8	12	72	8	72	30	4	12	52	1.59
391039--391162	35	3.6	34	84	3	158	35	18	24	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391268--391304	19	1.9	19	94	0	65	32	18	18	29	1.96
391634--391930	146	2.0	146	99	0	585	22	16	16	44	1.87
394939--395030	50	1.9	47	82	8	114	34	6	11	46	1.67
401755--401804	26	1.9	26	100	0	100	48	12	12	28	1.76
401756--401820	26	2.5	26	87	7	89	50	13	7	27	1.69
406049--406093	21	2.1	21	83	4	54	73	6	2	17	1.15
406063--406108	11	4.5	10	81	13	58	76	2	2	19	1.00
406063--406124	28	2.2	28	80	5	72	74	3	3	19	1.10
406469--406529	2	31.0	2	88	9	90	50	0	3	45	1.17
406469--406544	25	2.9	25	78	9	73	53	0	3	42	1.19
406480--406549	20	3.6	19	84	9	72	55	0	4	40	1.19
406472--406552	16	5.2	15	81	14	76	55	0	3	40	1.17
408852--409039	65	2.8	66	82	6	220	38	9	18	32	1.83
408988--409213	36	6.4	36	74	14	186	40	12	17	29	1.87
409022--409273	101	2.5	101	81	3	283	38	11	18	31	1.87
409160--409309	65	2.3	64	76	7	158	38	10	18	33	1.85
410139--410232	31	2.9	32	79	4	109	38	18	12	30	1.88
411155--411289	69	2.0	69	92	2	227	26	13	20	40	1.89
411361--411413	23	2.2	23	83	12	63	3	15	3	77	1.06
411362--411413	13	4.3	12	79	20	56	1	15	3	78	0.98
415877--415917	22	1.9	21	85	5	55	75	7	0	17	1.02
415890--415935	9	4.6	10	76	17	51	76	2	2	19	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415890--415944	27	2.0	27	86	6	76	74	1	1	21	1.01
416133--416171	8	4.9	8	81	12	53	74	0	0	25	0.82
416125--416176	24	2.3	22	90	6	77	73	0	1	25	0.94
416198--416323	2	64.0	2	96	3	229	50	0	0	48	1.06
424236--424277	20	2.0	21	86	4	59	50	23	14	11	1.76
425453--425493	21	1.9	22	85	5	57	39	7	21	31	1.81
426241--426298	30	1.9	30	92	0	98	36	13	15	34	1.87
428453--428508	19	3.4	16	75	15	51	26	8	19	44	1.80
428948--429050	21	4.8	21	79	4	125	20	21	25	33	1.97
438147--438186	17	2.4	17	100	0	80	25	0	47	27	1.52
450078--450116	3	13.0	3	94	0	69	64	0	0	35	0.94
450606--450937	112	3.0	112	87	1	488	28	19	15	37	1.91
451297--451353	22	2.6	22	91	5	89	40	12	12	35	1.80
451997--452034	18	2.1	18	95	0	67	57	2	5	34	1.35
452388--452430	16	2.7	16	100	0	86	11	16	0	72	1.13
459692--459723	15	2.1	15	94	0	55	53	6	15	25	1.65
460916--461244	165	2.0	165	95	0	586	23	23	14	38	1.91
464510--464560	21	2.6	20	85	11	70	33	17	21	27	1.96
465923--466019	50	1.9	50	85	4	133	34	25	23	16	1.95
470564--470626	22	2.9	22	92	0	99	42	33	0	23	1.55
470730--470797	34	2.0	34	100	0	136	17	20	8	52	1.71
473737--473785	25	2.0	24	88	4	71	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473795--473844	21	2.3	22	80	13	59	70	2	2	26	1.09
473797--473839	21	2.1	21	86	4	61	69	2	2	25	1.12
473824--473887	20	3.4	20	69	18	57	67	4	0	28	1.11
474096--474128	13	2.4	14	85	10	50	78	0	0	21	0.75
476679--476732	19	2.7	21	88	11	87	33	12	12	40	1.82
477382--477411	16	1.9	16	93	6	53	80	0	16	3	0.85
477380--477493	22	4.5	25	77	10	90	74	1	19	4	1.07
477380--477501	46	2.6	46	75	10	124	75	1	18	4	1.05
477449--477501	18	2.9	17	83	10	70	81	0	15	3	0.83
477451--477525	28	2.5	29	83	12	82	78	0	14	6	0.94

Tables:   1   2   3   4