genome.fa.s7891.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007891.1 Hibiscus syriacus cultivar Beakdansim tig00110273_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  893409

Tables:   1   2   3   4   

This is table  3  of  4  ( 423 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477450--477501	9	5.7	9	78	13	61	82	0	13	3	0.80
477465--477510	14	3.4	14	77	17	51	78	0	17	4	0.91
480372--480427	11	5.4	11	80	16	66	87	8	3	0	0.65
480372--480438	30	2.2	31	89	7	102	83	10	5	0	0.80
480372--480426	9	5.8	9	84	16	67	87	9	3	0	0.66
480372--480427	21	2.8	19	87	12	85	87	8	3	0	0.65
484455--484547	48	1.9	48	82	4	116	19	20	24	35	1.96
484558--484836	143	2.0	141	98	1	540	22	21	9	46	1.79
485355--485530	91	1.9	92	89	1	273	37	15	22	24	1.93
485216--485754	227	2.4	225	89	3	782	35	16	22	25	1.95
485582--485843	89	2.9	89	86	2	357	37	16	20	25	1.93
486056--486155	42	2.5	42	81	4	125	30	24	20	26	1.98
486391--486426	16	2.4	14	90	9	54	77	0	0	22	0.76
486394--486434	5	8.4	5	79	15	50	78	0	0	21	0.76
488135--488310	91	1.9	92	89	1	273	37	16	22	23	1.93
487998--488533	223	2.4	223	88	3	769	35	17	22	24	1.95
488362--488630	88	3.0	90	88	4	400	37	17	20	24	1.94
488838--488937	42	2.5	42	81	4	125	30	24	20	26	1.98
490290--490372	27	3.0	27	77	11	64	12	1	8	78	1.02
490330--490372	20	2.2	20	91	4	70	13	2	2	81	0.89
490797--490868	23	3.2	22	78	16	76	12	2	4	80	0.96
490800--490845	24	2.0	24	87	12	69	10	2	4	82	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490802--490869	29	2.4	28	80	9	84	14	2	4	77	1.04
490799--490850	7	7.3	7	75	12	52	11	1	3	82	0.88
494667--494921	129	2.0	130	98	0	494	30	13	7	49	1.68
501675--501736	32	1.9	32	93	0	106	46	6	14	32	1.70
502988--503050	28	2.3	29	78	8	69	49	1	1	47	1.20
510235--510268	16	2.1	16	88	0	50	50	0	2	47	1.16
510310--510343	16	2.0	18	88	11	54	26	2	5	64	1.30
510810--511057	130	1.9	130	91	0	406	35	12	15	36	1.86
511456--511531	35	2.2	35	92	0	125	35	1	23	39	1.63
512361--512394	16	2.1	16	88	0	50	61	20	2	14	1.46
512330--512417	46	1.9	46	81	9	108	53	20	2	23	1.57
512402--512459	23	2.5	23	85	0	80	37	18	10	32	1.85
514036--514069	17	1.9	18	88	5	52	38	26	14	20	1.91
515988--516022	10	3.5	10	84	0	52	31	25	0	42	1.55
516070--516110	18	2.3	18	91	4	66	29	4	2	63	1.28
522070--522175	51	2.1	50	81	10	117	26	27	27	18	1.98
526325--526436	56	2.0	56	100	0	224	23	23	12	41	1.88
526928--526981	24	2.2	24	100	0	108	11	27	35	25	1.90
527020--527095	3	24.7	3	84	7	91	63	1	0	35	1.03
527294--527537	131	1.9	129	86	5	350	25	18	33	22	1.96
527695--527915	61	3.5	62	78	12	211	43	12	13	31	1.80
527887--527950	29	2.4	27	82	12	78	42	17	14	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528141--528236	38	2.6	38	81	8	126	37	14	18	29	1.91
529375--529418	16	2.7	17	86	10	65	18	0	27	54	1.44
529574--529651	26	3.0	26	77	9	97	26	0	23	50	1.50
529894--530059	53	3.2	52	85	7	212	57	8	7	27	1.55
529894--530063	25	6.5	26	78	13	188	57	8	7	27	1.55
534500--534618	57	2.1	57	91	0	193	29	15	22	31	1.95
534609--534656	13	3.7	13	91	0	78	33	16	20	29	1.95
534602--534656	26	2.1	26	86	0	74	36	14	20	29	1.92
541875--541934	15	4.0	15	95	0	102	53	38	1	6	1.37
545310--545357	23	2.1	23	88	0	69	41	37	0	20	1.53
554178--554215	19	2.0	19	89	0	58	36	5	7	50	1.54
560924--561434	53	9.5	54	83	3	221	22	26	19	32	1.97
560900--561770	161	5.4	161	82	3	880	22	25	19	33	1.97
560900--561770	54	16.2	54	82	3	855	22	25	19	33	1.97
560900--561770	269	3.2	270	81	3	972	22	25	19	33	1.97
562176--562351	42	4.3	42	69	7	128	32	20	16	30	1.95
562177--562522	121	2.8	121	81	12	424	31	20	17	30	1.95
562274--562489	42	5.0	42	70	14	168	31	22	18	28	1.97
562409--562489	41	2.0	42	87	2	119	34	22	17	25	1.95
562433--562489	22	2.8	19	70	17	51	33	21	19	26	1.97
562225--562489	134	2.0	134	93	1	451	31	21	16	30	1.95
562491--562605	37	3.1	37	85	5	160	22	17	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563786--563893	17	6.9	15	80	15	96	6	8	0	85	0.75
563784--563878	22	4.3	22	79	10	95	6	7	0	86	0.71
563771--563850	26	3.0	28	78	10	78	7	5	0	87	0.66
563786--563878	1	93.0	1	76	0	78	6	6	0	87	0.68
563817--563899	43	2.0	42	87	2	121	7	12	0	80	0.89
568550--568705	55	2.8	55	88	1	224	24	23	8	44	1.80
581672--581874	55	3.7	55	89	1	309	33	16	11	38	1.84
584882--584930	24	2.0	24	84	7	64	24	20	12	42	1.86
591073--591100	2	14.0	2	100	0	56	50	0	0	50	1.00
593475--593508	18	1.9	17	94	5	59	64	0	0	35	0.94
593455--593529	27	2.7	29	80	10	84	57	0	0	42	0.98
601021--601095	14	5.4	14	80	16	93	84	0	14	1	0.70
601021--601091	8	8.8	8	79	14	83	84	0	14	1	0.69
601024--601095	23	3.1	22	84	11	83	84	0	13	1	0.68
601033--601095	9	6.9	9	85	14	85	85	0	12	1	0.66
601021--601091	32	2.2	33	90	7	110	84	0	14	1	0.69
603060--603449	149	2.6	148	88	3	577	36	11	14	37	1.82
603445--603560	42	2.8	41	79	8	126	25	21	18	34	1.96
603679--603775	42	2.3	42	78	7	108	26	21	20	30	1.98
603300--604106	235	3.5	233	88	3	1151	31	15	17	35	1.91
604539--604573	15	2.4	14	90	4	52	37	0	0	62	0.95
614899--614949	15	3.4	15	75	20	61	13	25	0	60	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614882--614962	30	2.7	30	94	0	126	14	24	0	60	1.35
614907--614960	15	3.3	18	69	28	57	14	24	0	61	1.34
618813--618864	21	2.6	21	90	6	81	32	13	7	46	1.72
619494--619529	17	2.1	17	89	0	54	80	0	19	0	0.71
621934--621969	18	2.1	18	90	10	58	38	19	5	36	1.75
622772--622823	21	2.6	21	90	6	81	32	13	7	46	1.72
638741--638875	28	4.9	28	68	12	109	41	10	19	28	1.84
638701--638875	81	2.2	80	92	1	287	39	10	21	29	1.86
640119--640148	13	2.4	13	94	5	53	26	30	0	43	1.55
644002--644056	24	2.3	24	81	3	76	16	5	7	70	1.28
645315--645368	28	1.9	28	92	0	90	42	9	18	29	1.81
645275--645449	81	2.2	80	90	1	269	39	9	21	30	1.84
645394--645449	28	2.0	28	92	0	94	44	8	16	30	1.78
646959--646993	15	2.3	15	95	0	61	20	28	34	17	1.95
651381--651436	17	3.4	16	76	16	60	66	0	17	16	1.26
651637--651683	21	2.4	19	85	7	67	0	19	2	78	0.85
660504--660608	36	2.9	36	91	1	158	28	5	35	30	1.81
664265--664294	12	2.4	13	94	5	53	0	23	0	76	0.78
664694--664745	22	2.3	23	86	3	70	28	3	34	32	1.76
664696--664785	36	2.5	38	89	10	122	28	5	35	30	1.80
667813--667851	8	4.9	8	87	12	62	0	20	2	76	0.90
667813--667859	16	2.9	16	84	9	51	0	19	6	74	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672753--672790	20	1.9	20	94	0	67	44	21	7	26	1.79
673488--673539	21	2.5	22	78	9	63	26	15	9	48	1.76
682345--682408	19	3.4	19	84	0	74	85	7	6	0	0.73
682346--682380	1	35.0	1	100	0	70	100	0	0	0	0.00
687005--687044	21	2.0	20	85	5	53	15	25	0	60	1.35
688106--688142	15	2.4	15	95	4	65	32	10	27	29	1.90
696410--696514	35	2.9	36	81	7	133	27	34	3	34	1.75
703407--703589	90	2.0	90	88	2	269	28	23	26	21	1.99
704859--704910	26	2.0	26	82	14	63	5	19	1	73	1.14
704885--704934	18	2.7	18	84	9	57	4	14	6	76	1.13

Tables:   1   2   3   4