genome.fa.s7894.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007894.1 Hibiscus syriacus cultivar Beakdansim tig00110279_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1425917

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 721 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263818--263851	12	2.8	12	90	0	50	14	0	29	55	1.40
264658--264730	19	3.7	20	85	5	85	28	13	21	35	1.92
264697--264832	20	6.8	20	73	12	109	21	16	22	39	1.92
264776--264904	20	6.4	20	83	8	113	21	16	24	37	1.93
264736--264864	60	2.2	60	89	0	213	21	16	22	39	1.92
264892--264945	20	2.7	20	75	11	65	27	14	29	27	1.95
270551--270618	31	2.2	31	85	12	95	30	8	7	52	1.60
271573--271618	15	2.9	16	78	18	51	54	21	4	19	1.61
274641--274682	19	2.2	19	83	8	50	9	11	9	69	1.38
276386--276448	21	3.0	21	71	17	60	30	1	4	63	1.24
280189--280247	21	2.7	22	76	5	75	22	25	20	32	1.98
280232--280327	40	2.4	40	91	0	165	34	18	21	25	1.96
280232--280337	20	5.3	20	77	8	108	33	18	20	27	1.96
280304--280363	20	3.0	20	85	0	75	28	25	18	28	1.98
283477--283512	18	2.0	18	94	0	63	55	25	2	16	1.55
283690--283930	20	12.7	20	76	11	211	36	21	20	21	1.96
283695--283913	54	4.0	54	83	5	244	36	21	20	21	1.95
284065--284144	30	2.4	34	80	20	114	55	15	3	26	1.57
284080--284145	30	2.2	30	100	0	132	54	13	3	28	1.54
285537--285629	42	2.2	42	80	3	107	22	17	39	20	1.92
286126--286201	20	3.8	20	96	0	143	40	25	18	15	1.90
288188--288260	20	3.7	20	83	3	94	41	24	19	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288185--288271	20	4.5	19	82	7	86	43	24	17	14	1.86
288657--288699	22	2.0	22	95	0	77	18	16	41	23	1.89
288873--288987	20	5.7	20	82	2	131	26	20	24	27	1.99
288872--288972	41	2.5	41	86	1	132	28	19	24	26	1.99
289097--289147	19	2.7	19	96	0	93	23	21	25	29	1.99
292148--292515	169	2.1	169	82	10	444	36	12	11	39	1.79
294749--294845	37	2.6	37	85	0	122	41	15	11	31	1.83
295392--295430	2	20.0	2	84	5	53	43	0	0	56	0.99
295637--295686	21	2.6	19	84	15	59	32	2	4	62	1.25
295722--295751	4	7.2	4	92	7	51	23	3	0	73	0.98
300015--300076	20	3.0	21	79	6	65	79	6	11	3	1.04
300005--300078	20	3.8	19	79	12	62	78	6	12	2	1.05
300015--300064	10	4.6	11	75	12	50	80	6	12	2	0.98
300023--300078	13	4.2	13	75	13	51	80	7	10	1	0.97
300686--300762	22	3.5	22	92	0	127	38	25	12	22	1.90
300954--301014	24	2.5	24	89	0	86	36	18	3	42	1.66
301590--302223	106	6.0	106	90	0	982	35	24	16	23	1.95
302974--303035	30	2.1	30	84	0	79	33	27	19	19	1.96
303717--303891	64	2.7	64	86	3	228	26	18	21	33	1.97
303717--303940	64	3.5	64	84	3	211	28	18	20	32	1.96
307624--307687	30	2.1	30	85	0	83	34	28	18	18	1.95
308367--308541	64	2.7	64	86	1	226	26	18	21	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308367--308590	64	3.5	64	84	3	211	28	18	20	33	1.96
309362--310426	106	10.1	106	89	2	1554	33	24	18	23	1.97
311061--311199	37	3.8	37	90	0	206	40	13	15	30	1.86
311734--311785	2	26.5	2	88	3	79	46	0	1	51	1.12
311962--312020	16	3.6	16	73	10	57	27	5	1	66	1.22
312052--312139	4	21.2	4	73	15	63	18	6	0	75	1.02
318193--318230	3	12.7	3	100	0	76	65	0	0	34	0.93
320205--320278	31	2.4	31	97	2	139	32	14	13	39	1.86
320411--320435	3	8.3	3	100	0	50	68	0	0	32	0.90
322415--322528	60	1.9	60	83	0	147	30	17	15	35	1.91
329233--329300	36	2.0	36	91	8	115	16	11	23	48	1.79
331281--331347	21	3.2	21	82	2	82	26	0	28	44	1.54
332280--332345	2	33.0	2	84	0	87	42	0	7	50	1.31
332281--332345	24	2.6	24	95	4	112	41	0	7	50	1.31
332282--332353	18	4.4	16	76	16	67	41	1	8	48	1.42
335898--336341	222	2.0	222	100	0	888	33	21	20	25	1.97
338324--338373	16	3.1	16	80	13	57	32	4	0	64	1.12
338407--338481	38	2.0	40	82	15	97	26	4	5	64	1.33
338477--338534	15	3.6	16	77	15	57	22	3	0	74	0.97
338645--338682	20	1.9	19	89	5	58	13	15	0	71	1.16
338745--338810	10	6.9	9	76	8	51	15	3	4	77	1.06
338714--338813	19	5.3	19	71	21	68	18	4	4	74	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338746--338813	29	2.4	28	80	9	75	16	2	4	76	1.07
338736--338809	38	1.9	38	84	13	98	14	2	5	77	1.07
341817--341842	11	2.4	11	100	0	52	34	0	11	53	1.37
344794--344931	69	2.0	69	85	5	190	36	21	15	27	1.93
345870--345975	32	3.3	31	84	2	113	31	14	16	37	1.89
346595--346912	106	3.0	106	90	1	503	34	25	17	22	1.96
347620--347705	36	2.4	36	92	3	140	40	17	9	32	1.81
348884--348936	18	2.8	19	80	5	72	28	1	0	69	0.99
348844--348957	37	3.0	37	75	11	97	24	3	1	70	1.13
348911--348952	17	2.4	17	88	8	57	21	0	0	78	0.75
348983--349049	33	2.0	33	83	11	84	25	4	5	64	1.36
349062--349102	8	4.8	8	85	14	55	17	0	0	82	0.66
349062--349101	17	2.2	19	91	8	66	15	0	0	85	0.61
349174--349234	25	2.4	25	78	8	70	14	4	6	73	1.20
351740--351812	36	2.0	36	100	0	146	41	10	17	30	1.84
355383--355434	23	2.3	23	100	0	104	53	13	13	19	1.72
356127--356184	29	2.0	29	93	0	98	41	8	8	41	1.66
359944--360093	81	1.8	82	85	1	212	32	20	18	29	1.96
359933--360295	41	8.8	41	68	10	175	30	19	17	31	1.95
359953--360256	84	3.7	82	77	5	254	31	19	17	31	1.95
364764--364822	21	2.8	21	84	0	73	18	5	20	55	1.61
365018--365243	43	5.3	43	89	2	283	26	22	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364975--365243	86	3.1	87	83	4	269	26	21	21	29	1.99
364975--365218	129	1.9	129	82	3	303	27	22	22	27	1.99
373406--373457	23	2.3	23	89	0	77	25	26	38	9	1.86
373413--373465	23	2.3	24	87	9	83	28	24	35	11	1.90
373483--373567	29	2.9	29	96	0	152	21	30	36	11	1.89
373769--373821	11	5.1	11	75	11	58	54	1	0	43	1.11
373763--373809	22	2.1	23	92	4	78	55	2	0	42	1.12
373763--373821	22	2.9	21	87	7	77	54	3	0	42	1.17
374369--374434	15	4.4	15	80	0	69	16	39	9	34	1.80
374387--374433	21	2.2	21	88	0	67	14	42	6	36	1.72
375483--375528	21	2.2	21	84	0	56	60	2	0	36	1.09
375580--375746	84	2.0	84	91	2	273	47	11	14	25	1.78
375744--375778	17	2.1	17	94	0	61	60	8	5	25	1.49
375911--375943	16	2.1	16	100	0	66	27	42	0	30	1.56
376154--376188	9	3.8	9	85	7	52	71	14	0	14	1.15
376154--376198	19	2.3	20	96	3	83	73	13	0	13	1.10
377128--377190	27	2.3	27	94	0	108	20	25	23	30	1.99
379268--379292	3	8.3	3	100	0	50	0	36	0	64	0.94
379884--379921	15	2.5	15	91	0	58	42	13	21	23	1.88
380341--380549	97	2.2	97	93	1	357	35	16	11	36	1.85
384916--384948	16	2.1	16	100	0	66	33	6	12	48	1.65
392682--392796	32	3.6	32	86	2	167	43	8	26	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395975--396014	21	2.0	21	85	14	57	40	7	5	47	1.54
396734--396776	2	21.5	2	100	0	86	48	0	0	51	1.00
397380--397453	31	2.4	31	88	4	105	32	21	6	39	1.80
406281--406352	31	2.3	31	80	4	83	30	9	8	51	1.64
406594--406652	31	1.9	31	85	0	82	45	6	15	32	1.72
410810--410868	31	1.9	31	85	0	82	45	6	15	32	1.72
413109--413229	29	4.1	29	85	7	147	45	13	17	23	1.84
414542--414579	3	13.0	3	84	15	53	68	0	0	31	0.90
415553--415609	28	2.0	28	100	0	114	31	7	26	35	1.83
418421--418601	62	3.0	59	90	6	274	45	10	4	39	1.60

Tables:   1   2   3   4   5   6   7