genome.fa.s7894.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007894.1 Hibiscus syriacus cultivar Beakdansim tig00110279_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1425917

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 721 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418424--418608	61	3.0	62	95	1	327	44	10	5	39	1.62
420669--420737	31	2.2	31	87	5	95	47	4	1	46	1.31
421891--421957	32	2.1	32	97	0	125	31	10	22	35	1.88
423730--423801	24	3.0	24	85	2	101	50	18	12	19	1.78
423734--423802	12	5.8	12	75	10	61	49	18	14	17	1.80
424917--424951	18	1.9	18	88	0	52	28	20	2	48	1.63
426266--426326	13	4.3	13	75	18	59	16	21	44	18	1.87
426276--426312	18	2.1	18	94	0	65	13	21	45	18	1.84
426266--426330	31	2.1	31	91	0	103	15	20	46	18	1.84
426741--426774	17	2.1	16	88	5	50	76	0	8	14	1.01
427250--427299	24	2.1	24	85	7	66	60	12	2	26	1.43
437003--437036	17	2.1	16	88	5	50	76	0	8	14	1.01
437511--437560	24	2.1	24	85	7	66	60	12	2	26	1.43
439807--439850	7	6.3	7	100	0	88	13	59	0	27	1.35
444512--444549	3	12.7	3	83	10	51	2	26	2	68	1.16
448740--448784	20	2.2	20	84	7	56	15	11	28	44	1.81
449300--449334	18	1.9	18	88	0	52	28	0	2	68	1.04
456871--456937	7	9.6	7	100	0	134	56	0	43	0	0.99
457444--457513	31	2.3	31	79	0	77	32	14	2	50	1.58
464482--464511	14	2.1	14	100	0	60	33	36	0	30	1.58
464429--464592	79	2.1	79	100	0	328	32	18	0	48	1.49
464561--464590	14	2.1	14	100	0	60	33	36	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464429--464614	79	2.3	79	94	0	282	31	20	0	47	1.54
473496--473583	18	4.9	18	91	0	140	23	32	25	18	1.97
474149--474206	20	2.6	22	89	10	84	25	22	20	31	1.98
480304--480495	81	2.4	81	82	6	237	24	26	18	31	1.97
479951--480644	204	3.4	202	87	4	950	23	25	19	31	1.98
480458--480537	42	1.9	42	89	5	126	28	26	18	26	1.98
480385--480612	123	1.9	123	82	3	289	24	24	19	31	1.98
480750--480912	42	3.9	42	85	1	177	25	25	21	27	1.99
480750--480913	84	2.0	84	82	2	204	25	25	21	27	1.99
480842--481396	204	2.7	203	85	0	678	25	26	18	29	1.98
481120--481278	81	2.0	81	85	0	219	23	28	18	29	1.98
481161--481519	123	2.9	123	82	1	407	23	28	19	28	1.98
480957--481604	327	2.0	327	83	1	814	24	27	18	28	1.98
484705--484751	23	2.1	21	88	7	67	57	12	8	21	1.62
484748--484796	24	2.0	26	84	15	68	51	6	4	38	1.46
484908--485071	69	2.4	69	84	4	197	31	29	13	26	1.94
485535--485563	13	2.1	14	93	6	51	62	3	0	34	1.12
492603--492633	2	15.5	2	100	0	62	48	0	0	51	1.00
494348--494584	127	1.9	128	92	0	404	19	19	15	44	1.86
502765--502795	16	1.9	16	100	0	62	70	9	0	19	1.14
502769--502806	16	2.4	16	86	8	51	71	10	2	15	1.25
504823--504904	40	2.0	40	92	0	137	26	15	24	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505009--505132	45	2.8	45	87	1	169	44	8	19	28	1.79
505053--505126	25	3.2	25	64	25	61	41	8	21	28	1.81
512742--512812	28	2.5	28	97	0	133	25	16	7	50	1.70
514837--514879	16	2.5	18	85	7	54	58	2	0	39	1.11
516573--516784	21	9.5	21	70	15	122	18	56	5	19	1.60
516621--516763	48	3.0	46	89	6	205	20	56	4	18	1.58
516624--516784	69	2.3	69	82	8	186	21	56	4	18	1.58
518474--518558	34	2.5	34	100	0	170	41	0	0	58	0.98
518466--518555	9	9.8	9	76	17	69	43	0	0	56	0.99
518548--518599	25	2.0	27	85	7	72	17	11	36	34	1.86
523741--523838	48	2.0	48	100	0	196	37	8	14	39	1.76
532609--532678	29	2.3	31	80	4	81	40	7	18	34	1.78
533216--533355	60	2.4	59	78	4	165	27	18	17	36	1.94
534728--534961	116	2.1	112	89	6	359	38	14	10	36	1.81
538262--538401	60	2.3	59	81	11	151	35	22	3	38	1.71
538542--538724	57	3.1	58	79	9	178	38	5	22	32	1.77
538563--538649	29	3.0	29	72	5	86	39	6	22	31	1.81
539159--539208	17	3.0	16	74	25	50	54	6	0	40	1.25
548488--548522	13	2.8	13	91	4	54	57	0	0	42	0.99
549677--549913	125	1.9	126	98	0	458	21	26	20	31	1.98
550301--550400	33	3.0	34	83	2	139	39	3	4	54	1.35
550920--551013	21	4.5	21	92	5	129	20	26	35	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551017--551064	21	2.3	21	85	0	60	22	12	39	25	1.89
555547--555641	29	3.2	29	65	11	75	36	10	13	38	1.80
555527--555640	60	1.9	60	87	3	167	35	11	12	40	1.79
560849--561062	103	2.1	102	90	3	331	29	14	16	39	1.88
564663--564690	2	14.0	2	100	0	56	50	0	0	50	1.00
568654--568681	2	14.0	2	100	0	56	50	0	0	50	1.00
569006--569148	59	2.4	60	94	1	243	37	11	14	36	1.83
569314--569371	28	2.1	28	100	0	116	24	3	53	18	1.60
570157--570216	31	2.0	30	86	3	84	38	10	21	30	1.86
570849--570939	43	2.1	43	95	0	164	27	18	20	32	1.96
575167--575191	2	12.5	2	100	0	50	48	0	0	52	1.00
575212--575257	22	2.1	22	84	8	58	50	0	2	47	1.13
575223--575295	33	2.2	34	88	9	107	57	1	0	41	1.07
577209--577354	60	2.5	60	80	7	156	35	18	13	32	1.89
579647--579690	5	8.8	5	87	0	61	0	20	4	75	0.98
580549--580592	13	3.4	13	80	0	61	31	6	18	43	1.76
580679--580709	2	15.5	2	100	0	62	48	0	0	51	1.00
580795--580840	19	2.5	18	83	13	58	36	2	4	56	1.31
581652--581690	3	13.0	3	83	0	51	64	5	2	28	1.28
590664--590704	21	2.0	21	95	0	73	41	17	0	41	1.49
590792--590840	24	2.0	25	84	15	66	63	12	4	20	1.45
591470--591525	16	3.6	16	80	4	78	39	7	17	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591454--591523	31	2.3	31	89	0	104	38	7	18	35	1.78
592910--592957	20	2.4	20	82	0	60	22	6	14	56	1.61
593121--593161	17	2.3	18	80	16	50	4	17	0	78	0.93
595037--595194	60	2.6	59	89	3	226	34	23	5	37	1.77
595312--595469	59	2.6	59	84	7	194	37	4	22	34	1.75
595347--595494	59	2.5	59	86	8	169	37	3	24	34	1.72
595527--595559	16	2.1	16	100	0	66	18	12	9	60	1.57
606062--606086	2	12.5	2	100	0	50	52	0	48	0	1.00
606923--606954	12	2.6	13	85	14	50	25	28	0	46	1.53
613809--613855	21	2.2	22	96	3	87	29	23	4	42	1.73
618548--618615	28	2.4	28	100	0	136	38	17	13	30	1.88
619502--619528	2	13.5	2	100	0	54	51	0	0	48	1.00
622469--622552	19	4.3	19	66	19	55	52	0	11	35	1.38
622454--622582	60	2.2	58	81	12	145	51	1	10	36	1.47
622473--622589	60	2.0	60	86	6	166	52	0	10	35	1.41
623226--623264	20	2.0	20	94	0	69	23	25	15	35	1.94
623649--623689	21	2.0	21	85	4	57	34	21	14	29	1.93
623833--623903	19	3.6	19	75	9	63	22	11	29	36	1.89
624399--625364	511	1.9	511	87	2	1430	35	11	12	40	1.79
625365--625428	32	2.0	32	82	11	78	50	7	9	32	1.64
631287--631317	16	1.9	16	93	0	53	54	16	9	19	1.68
640624--640782	83	1.9	83	85	2	221	45	11	12	29	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643794--643871	23	3.4	22	73	5	66	21	21	20	35	1.96
646936--646986	21	2.4	21	81	12	61	19	13	39	27	1.90
647220--647305	21	4.1	21	79	8	86	22	40	10	26	1.86
648915--649013	33	3.1	33	86	2	112	25	11	23	40	1.87
653906--654004	39	2.5	39	78	12	114	41	2	37	19	1.63
654814--654864	19	2.8	18	81	3	57	31	29	21	17	1.96
661329--661355	6	4.5	6	100	0	54	0	29	0	70	0.88
664135--664254	61	2.0	61	96	0	222	39	20	12	28	1.88
665525--665609	2	42.5	2	100	0	170	49	0	0	50	1.00
667218--667261	16	2.8	16	92	0	79	56	22	11	9	1.62

Tables:   1   2   3   4   5   6   7