genome.fa.s7912.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007912.1 Hibiscus syriacus cultivar Beakdansim tig00110313_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1361188

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 666 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366990--367032	20	2.2	20	91	0	68	27	39	11	20	1.88
367072--367118	22	2.1	22	84	0	58	23	23	19	34	1.97
369005--369066	23	2.7	23	92	2	99	19	25	32	22	1.97
377544--377606	23	2.7	23	90	4	92	19	25	31	23	1.98
381417--381462	21	2.2	21	85	11	60	39	10	2	47	1.51
383305--383357	20	2.6	21	80	14	67	16	22	41	18	1.90
386017--386054	19	2.0	19	89	0	58	15	26	34	23	1.95
386036--386102	23	2.9	23	86	4	91	17	25	29	26	1.98
396983--397014	2	16.0	2	100	0	64	50	0	0	50	1.00
401297--401390	22	4.4	22	77	8	113	19	18	24	38	1.93
401248--401368	41	2.9	43	83	8	144	19	18	23	38	1.93
402007--402052	5	9.4	5	97	2	85	0	41	21	36	1.54
402053--402085	6	5.5	6	100	0	66	0	15	51	33	1.43
402192--402273	41	2.0	41	85	7	112	37	24	20	17	1.93
403856--403952	20	4.8	20	87	0	113	12	21	39	26	1.89
403852--403971	40	3.0	40	81	3	118	12	20	38	28	1.89
404458--404489	11	2.8	12	95	4	57	40	9	3	46	1.52
407872--407917	18	2.5	19	82	3	58	19	26	17	36	1.94
415839--415916	23	3.5	23	72	12	63	26	6	10	56	1.57
418643--418753	31	3.5	31	68	13	98	35	19	22	22	1.96
418644--418773	66	2.0	66	89	0	197	35	21	22	20	1.96
420854--420907	22	2.5	22	84	0	63	40	24	16	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420838--420892	22	2.5	22	88	5	76	41	25	14	18	1.88
420909--420947	20	2.0	20	84	0	51	25	10	33	30	1.89
422428--422467	18	2.3	18	86	4	55	60	15	0	25	1.35
423088--423217	66	2.0	66	85	0	179	36	19	21	23	1.95
444061--444147	43	2.0	43	88	0	129	35	21	22	19	1.96
445320--445506	46	4.0	46	90	0	284	42	13	20	23	1.88
445322--445439	20	5.3	20	64	25	58	39	13	23	22	1.90
445334--445458	26	5.3	26	66	21	103	42	14	21	21	1.88
445323--445527	92	2.2	93	87	0	295	43	12	20	22	1.86
445324--445543	46	4.8	46	81	9	225	43	12	20	23	1.86
455407--455447	8	5.5	8	83	16	61	19	24	41	14	1.89
455407--455465	13	4.3	13	89	6	82	18	22	44	15	1.87
457615--457784	45	3.8	45	89	2	252	39	8	22	29	1.83
457615--457784	91	1.9	89	87	2	250	39	8	22	29	1.83
462626--462700	29	2.6	29	95	0	132	38	17	9	34	1.82
463109--463368	140	1.9	140	84	4	355	40	18	12	28	1.86
473408--473467	26	2.2	28	80	14	72	18	23	8	50	1.74
475526--475555	15	2.0	15	100	0	60	26	6	26	40	1.81
479860--479930	22	3.2	22	80	7	81	18	22	25	33	1.96
482583--482662	19	4.2	19	80	0	88	20	11	16	52	1.73
486726--486791	22	3.0	22	93	0	105	31	15	21	31	1.94
490165--490214	25	2.0	25	88	0	73	38	22	12	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491727--491769	3	14.3	3	100	0	86	67	32	0	0	0.91
498987--499070	36	2.3	36	91	4	134	36	25	14	23	1.92
498987--499108	36	3.6	33	84	7	113	38	22	13	24	1.91
501313--501353	7	5.9	7	85	0	55	17	0	39	43	1.49
508249--508469	113	2.0	113	95	0	397	42	12	11	33	1.79
509060--509132	36	2.0	36	97	0	137	23	8	17	50	1.73
509370--509424	20	2.8	20	91	2	85	36	12	21	29	1.91
510218--510260	18	2.4	18	96	0	77	16	9	34	39	1.80
510386--510640	81	3.2	80	87	2	359	37	11	20	30	1.88
513242--513269	2	14.0	2	100	0	56	50	0	0	50	1.00
515802--516219	81	5.2	81	87	1	552	37	11	21	30	1.89
522924--522994	30	2.4	30	80	0	79	38	15	5	40	1.71
525339--525377	19	2.1	19	85	0	51	15	28	20	35	1.93
526040--526083	20	2.2	20	100	0	88	29	25	15	29	1.96
530225--530350	47	2.8	44	81	9	155	31	19	7	42	1.78
530995--531569	283	2.0	283	99	0	1132	41	18	5	34	1.74
540546--540643	19	5.2	19	83	2	135	18	31	20	29	1.96
542807--542915	23	4.7	23	91	6	166	33	27	20	19	1.96
542807--542915	48	2.3	46	90	6	166	33	27	20	19	1.96
543564--543615	20	2.6	20	90	6	79	25	30	17	26	1.97
544195--544245	20	2.6	20	90	3	77	29	11	9	49	1.72
548119--548170	20	2.7	20	87	3	70	34	11	9	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548828--548879	20	2.7	20	84	3	70	38	11	7	42	1.70
547926--549349	709	2.0	709	97	0	2672	29	24	13	33	1.93
549738--549878	66	2.2	66	89	3	216	42	26	3	27	1.71
554499--554650	55	2.8	56	85	3	168	32	21	16	29	1.95
554546--554650	55	1.9	55	98	0	201	32	19	18	30	1.95
554767--554810	21	2.1	21	91	0	70	27	20	15	36	1.93
560823--561030	55	3.8	56	85	6	259	31	19	18	30	1.95
565328--566567	617	2.0	617	99	0	2446	36	8	17	37	1.81
566749--566799	26	2.0	26	88	0	75	37	19	15	27	1.92
569522--570031	255	2.0	255	100	0	1020	43	15	7	33	1.74
575058--575104	18	3.0	15	77	19	51	46	6	12	34	1.67
575061--575094	18	1.9	18	94	5	61	41	5	11	41	1.66
575283--575335	21	2.5	21	93	0	88	28	28	22	20	1.99
575571--575669	33	3.0	33	94	1	164	45	15	7	32	1.73
575664--575703	21	1.9	21	94	0	71	47	7	15	30	1.72
577994--578039	12	3.6	12	81	16	56	17	19	17	45	1.85
577993--578032	15	2.9	14	85	14	57	20	17	15	47	1.83
578084--578123	20	2.0	20	90	0	62	45	20	15	20	1.86
582604--582676	28	2.6	28	95	4	130	46	10	8	34	1.69
582824--583130	103	3.0	104	73	11	301	31	16	8	42	1.78
585362--585434	36	2.0	36	97	0	137	45	8	17	28	1.77
587235--587291	12	4.8	12	76	8	62	15	15	17	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587235--587306	24	3.0	24	79	0	90	16	13	16	52	1.74
593680--593749	23	3.3	21	79	11	81	25	31	27	15	1.96
598334--598379	23	2.0	23	82	0	56	21	52	10	15	1.73
599036--599108	36	2.0	36	94	0	128	43	8	19	28	1.79
600894--600962	24	2.9	24	80	0	84	18	11	15	53	1.72
603146--603180	17	2.1	17	88	0	52	71	2	2	22	1.13
603435--603468	17	2.0	17	100	0	68	41	23	5	29	1.78
604732--604770	19	2.1	18	85	9	51	23	5	2	69	1.21
604733--604773	21	2.0	21	85	4	57	21	4	2	70	1.18
611266--611322	24	2.6	21	74	15	60	29	22	19	28	1.98
611266--611363	45	2.2	44	85	12	130	29	22	20	27	1.98
611542--611579	19	2.0	20	89	5	60	47	21	5	26	1.71
611679--611705	14	1.9	14	100	0	54	44	0	7	48	1.31
614444--614504	20	3.0	20	85	0	86	9	18	8	63	1.48
616007--616057	25	2.0	25	92	0	84	33	7	17	41	1.79
623297--623346	3	16.7	3	95	0	91	30	0	2	68	1.01
623424--623450	13	2.1	13	100	0	54	29	0	7	62	1.22
629058--629148	31	3.0	31	96	3	168	32	6	17	42	1.75
629377--629416	20	1.9	21	85	10	55	37	37	10	15	1.80
630910--630941	6	5.5	6	92	7	57	50	15	0	34	1.45
631085--631145	23	2.7	23	89	0	95	27	27	26	18	1.98
631593--631627	15	2.3	15	90	0	52	34	22	0	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633771--633816	22	2.0	23	87	4	67	43	0	0	56	0.99
633775--633826	22	2.3	22	78	15	61	48	0	0	51	1.00
634131--634168	16	2.4	16	86	8	51	57	0	0	42	0.98
634735--634759	2	12.5	2	100	0	50	52	0	0	48	1.00
640235--640385	65	2.4	65	83	6	184	31	17	21	29	1.96
640729--640762	12	2.7	13	86	9	52	41	5	8	44	1.60
646115--646139	3	8.3	3	100	0	50	0	32	0	68	0.90
647607--647746	65	2.2	64	85	6	185	27	17	26	28	1.98
663042--663086	17	2.7	17	82	3	56	28	20	17	33	1.95
664789--664909	40	3.1	39	84	7	158	31	31	14	22	1.94

Tables:   1   2   3   4   5   6