genome.fa.s7912.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007912.1 Hibiscus syriacus cultivar Beakdansim tig00110313_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1361188

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 666 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1204355--1204390	14	2.6	14	90	0	54	30	0	22	47	1.52
1204507--1204571	19	3.4	19	93	0	112	49	16	18	15	1.80
1204478--1204593	33	3.4	33	78	11	124	44	19	20	14	1.86
1204612--1204649	20	1.9	20	94	0	67	15	18	26	39	1.91
1205706--1205759	24	2.2	24	90	0	81	24	16	20	38	1.92
1205934--1205958	12	2.1	12	100	0	50	72	0	28	0	0.86
1208250--1208308	19	3.4	19	73	22	74	45	18	22	13	1.84
1208435--1208471	14	2.6	14	91	0	65	45	24	0	29	1.53
1209828--1209894	21	3.2	21	68	4	55	19	20	35	23	1.95
1209828--1209950	42	2.9	41	79	7	113	22	18	36	21	1.95
1211983--1212067	33	2.5	33	86	1	107	40	23	21	15	1.91
1212050--1212095	20	2.3	20	88	3	67	47	21	17	13	1.81
1212633--1212685	20	2.7	20	81	0	70	26	18	26	28	1.98
1212694--1212747	20	2.7	20	91	0	90	25	16	25	31	1.97
1212818--1212913	21	4.6	21	97	0	174	33	30	15	20	1.94
1215104--1215133	13	2.3	13	94	0	51	16	23	43	16	1.87
1219481--1219595	61	1.9	61	90	0	185	24	19	26	29	1.98
1219668--1220100	47	9.2	47	93	0	706	38	7	19	33	1.80
1226825--1227161	47	7.3	47	89	5	537	39	8	19	33	1.81
1227064--1227149	39	2.2	39	93	0	145	40	6	18	33	1.78
1228782--1228971	96	2.0	96	84	0	245	44	16	11	27	1.83
1233018--1233077	23	2.6	23	91	0	93	41	18	15	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1233137--1233185	20	2.5	20	93	0	80	24	12	26	36	1.91
1248565--1248603	12	3.2	12	79	13	53	28	12	23	35	1.91
1248549--1248667	24	5.0	24	87	6	170	26	14	20	38	1.91
1248783--1248877	43	2.2	43	98	0	181	15	10	36	36	1.82
1253493--1253591	24	4.1	24	83	10	123	27	15	17	40	1.89
1253540--1253603	24	2.7	24	90	0	83	28	14	15	42	1.86
1253502--1253603	48	2.1	48	82	7	118	27	13	17	41	1.87
1255242--1255286	13	3.5	13	78	0	54	17	40	22	20	1.92
1255262--1255307	7	6.6	7	76	18	51	15	30	26	28	1.96
1257813--1257931	24	5.0	24	84	4	141	26	13	19	40	1.89
1258047--1258141	43	2.2	43	98	0	181	15	10	36	36	1.82
1260196--1260251	13	4.1	13	77	15	51	16	39	19	25	1.91
1262756--1262874	24	5.0	24	84	4	141	27	15	17	39	1.90
1262991--1263084	43	2.2	43	96	0	170	17	9	37	36	1.82
1283444--1284834	699	2.0	700	94	0	2453	34	13	15	36	1.87
1286593--1286692	24	4.2	24	71	5	85	47	16	13	24	1.81
1286587--1286694	48	2.3	48	75	1	110	48	15	12	23	1.80
1287754--1287789	18	2.0	18	88	0	54	30	16	0	52	1.44
1289092--1289122	7	4.4	7	91	0	53	25	25	35	12	1.92
1289093--1289138	14	3.3	15	88	8	62	21	23	39	15	1.92
1289092--1289135	20	2.2	20	88	12	63	22	25	38	13	1.91
1289120--1289196	18	4.6	18	81	15	110	11	19	50	18	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1289114--1289192	31	2.5	31	91	0	140	13	20	48	17	1.81
1289138--1289173	13	2.8	13	86	0	54	13	16	50	19	1.79
1289114--1289143	13	2.3	13	100	0	60	13	23	46	16	1.82
1292477--1292512	18	2.0	18	88	0	54	30	16	0	52	1.44
1293814--1293845	7	4.4	7	92	7	55	25	28	34	12	1.92
1293815--1293861	8	6.5	8	79	20	59	21	25	38	14	1.92
1293815--1293861	15	3.3	15	91	5	71	21	25	38	14	1.92
1293843--1293919	18	4.6	18	81	15	110	11	19	50	18	1.77
1293837--1293915	31	2.5	31	91	0	140	13	20	48	17	1.81
1293861--1293896	13	2.8	13	86	0	54	13	16	50	19	1.79
1293822--1293866	13	3.3	13	90	6	63	17	24	42	15	1.88
1300064--1300107	23	2.0	23	82	13	56	34	6	4	54	1.47
1306149--1306192	23	2.0	23	82	13	56	34	6	4	54	1.47
1315673--1315726	27	2.1	24	86	10	72	40	7	20	31	1.80
1315680--1315733	27	2.1	26	83	10	67	40	9	18	31	1.82
1324940--1324990	27	1.9	26	84	4	66	17	25	25	31	1.97
1332040--1332069	13	2.4	13	94	5	53	43	0	30	26	1.55
1336891--1336937	24	2.0	24	91	0	76	21	23	40	14	1.90
1344940--1344999	25	2.4	25	82	0	66	30	28	30	11	1.92
1345053--1345093	15	2.7	15	88	0	55	31	39	26	2	1.70
1351464--1351503	16	2.5	16	95	0	71	37	30	12	20	1.89
1356290--1356365	24	3.2	24	86	3	109	23	19	19	36	1.95

Tables:   1   2   3   4   5   6

The End!