genome.fa.s7922.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007922.1 Hibiscus syriacus cultivar Beakdansim tig00110327_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  874983

Tables:   1   2   3   4   

This is table  2  of  4  ( 382 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166911--167190	108	2.6	110	92	2	474	28	28	15	28	1.96
168341--168411	1	71.0	1	75	0	61	8	4	0	87	0.66
168341--168409	7	9.6	7	80	17	70	8	4	0	86	0.68
168346--168413	9	7.9	9	80	12	81	8	4	0	86	0.69
168340--168416	26	3.0	26	86	7	113	9	6	0	84	0.78
169544--169575	3	10.3	3	93	6	55	3	34	0	62	1.11
176910--176959	14	3.5	15	83	10	68	52	0	4	44	1.20
176935--176985	3	18.0	3	80	11	63	60	0	1	37	1.08
176938--176985	11	4.5	11	79	10	64	60	0	2	37	1.09
176934--176985	14	3.5	14	82	14	68	59	0	1	38	1.08
176903--176986	20	4.4	19	74	15	75	53	1	3	41	1.26
176919--176992	14	5.5	13	77	18	62	54	0	2	43	1.14
180018--180042	13	1.9	13	100	0	50	24	32	4	40	1.73
185352--185384	16	2.1	16	100	0	66	57	24	12	6	1.57
185450--185489	10	4.0	10	90	0	62	57	22	12	7	1.60
185451--185490	20	2.0	20	95	0	71	55	22	15	7	1.65
185794--185860	14	5.1	14	82	14	88	55	17	13	13	1.70
185795--185846	24	2.2	24	100	0	104	57	13	13	15	1.65
185801--185873	24	3.0	24	87	4	83	54	16	13	15	1.71
197343--197370	2	14.0	2	100	0	56	50	0	0	50	1.00
197985--198085	44	2.3	44	98	0	193	48	11	4	34	1.62
199806--199858	27	2.0	27	88	7	81	35	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204139--204178	21	1.9	21	84	0	53	42	15	15	27	1.86
204271--204372	3	32.7	3	80	14	102	67	0	31	0	0.97
204276--204389	18	6.1	18	73	20	92	65	0	32	1	1.03
204276--204370	21	4.8	20	81	13	117	66	0	32	1	0.99
204283--204390	32	3.5	30	73	18	96	65	0	32	1	1.03
204585--204631	17	2.7	18	84	15	71	48	0	2	48	1.13
209937--210009	24	3.0	24	85	0	101	39	23	9	27	1.85
212645--212703	3	20.0	3	96	3	111	66	0	0	33	0.92
213036--213073	2	19.0	2	100	0	76	50	0	0	50	1.00
232984--233016	2	17.0	2	93	6	59	51	0	0	48	1.00
233262--233362	23	4.5	22	80	8	107	32	26	24	15	1.96
233461--233499	14	2.7	15	80	8	53	33	25	10	30	1.89
235944--235968	4	6.2	4	100	0	50	24	0	0	76	0.80
244996--245038	18	2.2	18	84	12	50	46	20	2	30	1.63
261059--261112	20	2.7	21	82	8	76	29	33	12	24	1.92
261131--261179	20	2.5	20	82	0	71	40	22	18	18	1.91
263646--263687	4	10.5	4	84	0	57	26	2	2	69	1.13
263824--263879	21	2.7	20	75	10	58	25	35	14	25	1.93
263831--263929	42	2.4	42	76	10	103	24	32	19	24	1.97
263856--263906	21	2.4	21	75	12	59	25	37	17	19	1.94
265352--265405	28	1.9	28	84	0	72	31	0	20	48	1.50
265352--265388	14	2.6	14	100	0	74	29	0	21	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265302--265454	80	2.0	74	86	7	207	32	0	17	49	1.52
265846--265881	18	2.0	18	88	0	54	19	2	25	52	1.59
268133--268186	24	2.2	24	83	0	63	38	20	16	24	1.92
268887--268924	16	2.5	15	84	12	51	65	0	5	28	1.14
269082--269153	19	3.7	19	94	3	117	27	12	23	36	1.91
269120--269175	20	2.7	22	89	8	82	21	17	25	35	1.95
269082--269187	19	5.4	19	88	7	90	23	15	24	36	1.93
273455--273568	35	3.3	35	91	4	169	43	20	5	30	1.73
273501--273561	21	3.2	21	65	29	64	42	21	4	31	1.74
273452--273595	35	4.2	35	83	12	140	41	20	6	31	1.77
277983--278102	35	3.3	36	87	5	172	43	19	5	32	1.72
278035--278094	21	3.2	21	65	30	62	43	20	5	31	1.73
277983--278129	35	4.2	36	83	7	169	41	19	6	33	1.76
277986--278133	72	2.1	68	81	9	183	42	18	6	32	1.75
280545--280617	21	3.5	21	88	1	103	39	16	21	21	1.92
280585--280678	41	2.3	39	82	10	116	35	23	20	21	1.96
280606--280684	20	3.9	20	80	3	95	34	25	18	21	1.96
280603--280680	41	1.9	41	94	0	138	37	24	17	20	1.94
293353--293436	23	3.7	23	93	0	132	51	0	27	21	1.48
293379--293490	58	1.9	57	89	5	172	51	0	28	18	1.52
294331--294433	26	4.0	26	98	0	197	50	6	2	39	1.44
310287--310366	36	2.2	36	82	4	99	17	36	12	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310913--311103	101	1.9	101	96	2	357	39	6	7	46	1.58
312364--313640	422	3.0	422	94	1	2160	32	19	19	28	1.96
313909--313943	2	17.5	2	100	0	70	51	0	0	48	1.00
328384--328418	18	1.9	18	88	11	54	54	8	17	20	1.68
329309--329623	149	2.1	149	94	2	544	26	17	20	34	1.95
329591--329635	23	2.0	23	90	0	72	22	26	26	24	2.00
334259--334301	21	2.0	21	100	0	86	23	25	23	27	2.00
340117--340197	16	5.1	16	68	11	51	49	0	3	46	1.19
340117--340211	32	3.0	32	95	0	163	47	1	4	47	1.28
343712--343839	65	2.0	65	88	0	193	39	13	20	26	1.89
345565--345589	2	12.5	2	100	0	50	52	0	0	48	1.00
350393--350424	12	2.7	12	95	0	55	68	9	6	15	1.36
355799--355877	28	2.8	28	96	0	140	50	17	12	18	1.77
365739--365800	32	2.0	31	87	9	90	48	1	1	48	1.21
366233--366296	29	2.2	30	91	2	103	43	6	3	46	1.44
384558--384623	33	2.0	33	96	0	123	33	9	16	40	1.80
385575--385689	42	2.7	43	85	5	135	46	8	17	26	1.77
385579--385721	44	3.3	42	80	8	137	46	8	17	27	1.76
386869--386914	25	1.9	24	86	8	67	65	0	6	28	1.17
387191--387246	24	2.3	23	77	22	62	10	25	7	57	1.58
393596--393623	2	14.0	2	100	0	56	50	0	0	50	1.00
397242--397286	20	2.2	20	100	0	90	33	4	17	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405624--405982	175	2.0	178	88	2	528	40	21	14	24	1.90
408822--408855	2	17.0	2	100	0	68	50	0	0	50	1.00
419966--420040	29	2.5	30	89	4	116	44	4	5	46	1.45
420130--420213	33	2.5	33	84	0	114	53	2	9	34	1.46
420166--420265	33	3.1	30	75	16	94	57	2	5	36	1.32
430805--430834	2	15.0	2	100	0	60	50	0	0	50	1.00
431749--431801	23	2.2	24	80	6	63	58	1	0	39	1.09
432327--432386	19	3.2	19	68	17	61	31	5	21	41	1.75
436339--436390	20	2.6	20	96	0	95	51	0	3	44	1.19
438286--438333	20	2.4	20	85	0	69	37	22	12	27	1.90
438301--438525	125	1.8	123	83	5	303	32	20	18	28	1.96
438611--438637	6	4.5	6	100	0	54	33	51	14	0	1.43
439927--439951	6	4.2	6	100	0	50	32	52	0	16	1.44
444601--444810	100	2.1	100	81	2	251	45	10	11	31	1.76
444727--444960	76	3.1	76	81	6	244	45	11	12	30	1.78
444803--445129	178	1.9	175	85	8	457	42	11	13	32	1.80
444977--445214	76	3.1	76	83	6	275	42	10	12	34	1.77
445232--445542	76	4.1	75	79	6	322	45	10	13	30	1.78
445055--445390	176	1.9	176	84	6	457	44	10	12	33	1.76
445232--445528	152	2.0	152	83	4	375	44	10	13	31	1.79
444978--445642	328	2.0	329	84	4	869	43	11	12	32	1.79
445476--445766	100	2.9	100	86	0	393	40	13	11	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446392--446723	108	3.1	108	83	4	393	37	12	10	40	1.77
450632--450690	28	2.1	28	100	0	118	55	3	16	23	1.56
453574--453628	21	2.5	21	82	14	67	58	0	7	34	1.26
453867--453930	15	3.9	15	73	25	58	32	4	14	48	1.64
453847--453950	35	3.0	34	91	6	165	32	5	15	46	1.70
458390--458432	22	2.0	22	90	9	70	65	2	2	30	1.18
467115--467237	61	2.0	61	100	0	246	54	9	4	30	1.54
469505--469542	2	19.0	2	100	0	76	50	0	0	50	1.00
469497--469545	16	3.4	15	84	15	68	48	0	0	51	1.00
471165--471204	21	1.9	21	89	0	62	50	5	7	37	1.53

Tables:   1   2   3   4