Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007922.1 Hibiscus syriacus cultivar Beakdansim tig00110327_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  874983

Tables:   1   2   3   4   

This is table  4  of  4  ( 382 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
842438--842587
66
2.3
67
89
5
234
30
27
25
17
1.97
843069--843372
149
2.0
149
99
0
599
27
16
20
35
1.94
843351--843395
23
2.0
23
86
0
63
20
24
28
26
1.99
846420--846502
36
2.3
36
85
8
107
43
18
4
33
1.71
846912--846949
19
2.0
19
94
0
67
50
21
7
21
1.74
850361--850459
10
10.3
9
77
12
81
17
28
26
28
1.97
850362--850459
19
5.1
19
78
14
78
16
28
26
28
1.97
850361--850459
29
3.4
28
83
5
117
17
28
26
28
1.97
850455--850510
17
3.6
17
77
22
77
17
46
23
12
1.82
850455--850510
29
1.9
29
100
0
112
17
46
23
12
1.82
850485--850527
22
2.0
22
90
0
68
18
44
23
13
1.86
850461--850493
12
2.8
12
100
0
66
18
45
24
12
1.83
850455--850534
29
2.8
28
88
7
108
17
42
23
16
1.88
857734--857802
9
7.3
9
80
8
75
15
28
27
27
1.96
857734--857802
19
3.7
18
77
9
75
15
28
27
27
1.96
857725--857789
29
2.2
30
89
8
98
16
26
26
30
1.97
857799--857863
22
3.0
22
88
0
94
21
44
21
12
1.85
857852--857876
7
3.6
7
100
0
50
16
28
28
28
1.97
864577--864627
26
2.0
26
84
7
68
45
23
1
29
1.64
864573--864632
19
3.1
19
73
22
54
45
21
1
31
1.62
864783--864827
23
2.0
23
86
0
63
26
26
26
20
1.99
866644--866686
21
2.0
21
86
0
59
16
25
27
30
1.97

Tables:   1   2   3   4

The End!