genome.fa.s7922.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007922.1 Hibiscus syriacus cultivar Beakdansim tig00110327_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  874983

Tables:   1   2   3   4   

This is table  3  of  4  ( 382 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489709--489767	2	29.5	2	96	0	109	47	0	1	50	1.11
495196--495220	12	2.1	12	100	0	50	20	16	24	40	1.91
508550--508681	48	2.8	48	76	13	137	21	16	18	42	1.89
508567--508681	24	4.8	24	88	6	162	22	17	19	40	1.91
508618--508691	24	3.1	24	86	3	78	21	16	18	43	1.88
513642--513773	48	2.8	48	76	13	137	21	16	18	42	1.89
513659--513773	24	4.8	24	88	6	162	22	17	19	40	1.91
513710--513783	24	3.1	24	86	3	78	21	16	18	43	1.88
517975--518003	2	14.5	2	100	0	58	48	0	0	51	1.00
521108--521193	3	28.3	3	97	2	163	33	0	0	66	0.92
521889--521915	5	5.4	5	100	0	54	18	81	0	0	0.69
523330--523715	192	2.0	194	98	1	758	28	11	21	37	1.89
554088--554238	43	3.6	42	86	7	200	49	24	1	24	1.61
554089--554229	47	3.0	47	90	8	216	50	24	1	23	1.57
554093--554223	4	33.2	4	85	11	182	50	24	1	23	1.58
555069--555160	30	3.1	30	100	0	184	23	19	23	32	1.97
555768--555821	23	2.3	23	96	0	99	31	31	12	24	1.93
563090--563174	3	28.3	3	100	0	170	0	32	0	67	0.91
563973--564000	2	14.0	2	100	0	56	50	0	0	50	1.00
566639--566681	2	21.5	2	100	0	86	48	0	0	51	1.00
569482--569509	7	4.0	7	100	0	56	28	42	14	14	1.84
582632--582672	3	13.7	3	94	0	73	34	0	31	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584789--584831	20	2.2	20	82	0	50	34	6	2	55	1.39
584926--584966	21	2.0	21	90	0	64	46	2	12	39	1.54
585154--585215	29	2.1	30	82	8	74	53	3	12	30	1.55
603573--603604	12	2.7	12	100	0	64	25	12	18	43	1.85
615909--616199	146	2.0	144	91	2	476	30	7	18	42	1.79
621895--621957	29	2.1	30	85	2	83	44	6	0	49	1.28
621966--622243	29	9.1	29	71	18	136	54	0	4	40	1.23
621974--622092	34	3.6	33	76	19	122	55	0	5	39	1.22
621966--622243	63	4.5	62	74	10	212	54	0	4	40	1.23
622038--622120	34	2.2	36	77	16	89	55	0	4	39	1.21
622092--622159	25	2.8	25	77	6	68	48	0	2	48	1.16
622173--622267	28	3.4	27	72	14	68	64	2	2	31	1.17
622171--622269	30	3.4	29	82	8	103	64	2	2	31	1.16
628650--628688	17	2.3	17	86	8	53	56	0	0	43	0.99
628642--628683	17	2.6	16	78	10	50	50	2	0	47	1.14
636313--636364	20	2.6	20	96	0	95	38	26	13	21	1.90
636354--636452	21	4.8	20	72	6	72	36	23	19	21	1.95
636419--636612	20	9.6	20	81	5	221	35	25	19	19	1.95
636419--636612	60	3.2	60	83	0	253	35	25	19	19	1.95
636993--637063	33	2.2	33	92	0	115	11	22	18	47	1.80
637143--637197	20	2.8	20	88	0	74	41	18	25	14	1.88
637183--637237	14	3.6	14	73	21	56	40	23	27	9	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637183--637253	33	2.2	33	92	0	115	42	25	23	8	1.82
637249--637346	19	5.7	19	70	22	81	10	24	22	42	1.84
637271--637360	14	5.7	14	74	23	81	8	25	23	42	1.83
637254--637368	33	3.5	33	95	0	212	9	24	20	45	1.81
639064--639440	183	2.0	185	96	3	708	22	12	19	45	1.83
639064--639440	93	4.1	93	96	3	710	22	12	19	45	1.83
639484--639612	19	7.3	19	75	17	125	45	28	17	8	1.77
639520--639612	33	2.8	32	91	4	150	46	27	18	7	1.76
639484--639612	52	2.5	52	74	14	140	45	28	17	8	1.77
639608--639742	19	7.6	19	75	16	128	11	19	23	45	1.82
639630--639686	14	3.7	14	77	20	60	10	21	22	45	1.82
639613--639705	33	2.8	33	95	0	168	10	20	21	47	1.80
641193--641217	12	2.1	12	100	0	50	0	28	0	72	0.86
641392--641438	24	2.0	24	87	8	69	38	21	14	25	1.92
642112--642480	20	18.5	20	86	4	458	20	18	26	34	1.96
643742--643803	3	19.3	3	83	9	70	30	3	0	66	1.08
643741--643803	16	3.6	17	81	14	76	31	3	0	65	1.09
648910--650249	106	12.6	106	95	0	2295	34	24	17	23	1.96
648910--650249	532	2.5	531	95	0	2358	34	24	17	23	1.96
650602--650663	3	19.3	3	80	9	61	30	4	0	64	1.14
650630--650674	7	6.7	7	92	5	67	26	0	0	73	0.84
650622--650663	19	2.2	19	95	0	75	30	2	0	66	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657991--658021	12	2.5	13	89	10	55	16	6	0	77	0.97
659563--659593	16	1.9	16	93	0	53	19	0	0	80	0.71
659622--659669	25	1.9	25	87	8	71	25	0	0	75	0.81
659615--659669	25	2.1	25	83	12	67	23	1	0	74	0.91
663268--664663	105	13.3	104	90	2	1969	32	25	18	23	1.97
663268--664663	634	2.2	628	89	2	2009	32	25	18	23	1.97
666069--666098	13	2.2	14	94	5	53	16	0	0	83	0.65
666127--666174	24	1.9	27	84	16	68	25	2	0	72	0.95
669598--669639	22	1.9	22	90	0	66	69	9	11	9	1.38
675239--675277	18	2.2	18	86	9	53	28	2	12	56	1.50
695141--695174	17	1.9	18	88	5	52	52	2	0	44	1.16
696145--696184	15	2.6	15	92	4	62	27	47	20	5	1.70
696157--696193	15	2.5	15	95	0	65	29	51	13	5	1.63
697170--697236	29	2.3	29	75	10	66	62	5	11	19	1.49
697257--697296	2	19.5	2	89	5	62	52	2	0	45	1.14
703530--703562	2	16.5	2	100	0	66	0	51	0	48	1.00
709332--709377	24	1.9	24	100	0	92	23	13	39	23	1.90
714140--714191	2	26.0	2	88	0	77	50	5	0	44	1.26
716328--716352	13	1.9	13	100	0	50	8	16	36	40	1.77
730541--730583	20	2.1	21	86	4	61	41	6	0	51	1.29
737101--737182	40	2.0	40	92	0	137	41	2	4	51	1.36
743333--743357	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747809--747843	2	17.5	2	100	0	70	0	48	0	51	1.00
751690--751927	117	2.0	117	95	0	431	24	30	14	30	1.94
755982--756066	6	14.2	6	97	0	161	32	49	16	1	1.53
756064--756102	5	7.8	5	91	0	51	23	33	41	2	1.68
761964--761988	6	4.2	6	100	0	50	36	48	16	0	1.46
761986--762029	5	8.8	5	87	0	52	20	34	40	4	1.73
761989--762017	10	2.9	10	100	0	58	10	41	41	6	1.66
765058--765101	3	14.7	3	90	0	70	34	4	0	61	1.16
765803--765898	45	2.1	45	88	3	140	42	5	1	51	1.31
770407--770483	2	39.5	2	92	5	131	46	0	0	53	1.00
788818--788846	3	9.7	3	100	0	58	0	31	0	68	0.89
793040--793732	345	2.0	345	99	0	1368	37	16	16	29	1.91
795811--795844	18	1.9	18	88	5	52	67	5	14	11	1.39
796502--796549	2	24.0	2	100	0	96	50	0	0	50	1.00
800108--800135	14	2.0	14	100	0	56	28	35	28	7	1.84
801951--802081	68	1.9	68	92	0	217	20	14	22	42	1.88
803503--803554	26	2.0	26	81	7	61	44	1	21	32	1.63
805459--805515	30	1.9	30	88	0	87	28	21	19	31	1.97
807803--807856	25	2.1	27	89	6	85	46	1	0	51	1.11
808064--808107	3	15.3	3	81	9	56	59	0	2	38	1.10
810192--810472	123	2.3	122	81	4	300	35	18	20	25	1.95
812574--812618	17	2.7	18	80	16	60	75	0	11	13	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
813339--813390	2	25.5	2	86	3	68	50	1	1	46	1.23
813553--813662	24	4.6	24	74	10	93	48	16	13	21	1.81
816100--816140	18	2.3	18	91	0	64	14	19	48	17	1.81
820221--820289	20	3.5	19	75	9	66	42	14	18	24	1.88
832490--832608	35	3.3	36	90	5	179	43	17	5	33	1.71
835399--835441	21	2.0	21	81	0	50	30	30	25	13	1.94
835421--835570	66	2.3	67	92	3	250	30	28	26	16	1.96
836052--836355	149	2.0	149	97	0	572	27	16	19	36	1.93
836334--836378	23	2.0	23	86	0	63	20	24	28	26	1.99
841920--841954	17	1.9	19	88	11	56	2	31	0	65	1.07

Tables:   1   2   3   4