genome.fa.s7951.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007951.1 Hibiscus syriacus cultivar Beakdansim tig00110374_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  657610

Tables:   1   2   3   4   

This is table  2  of  4  ( 383 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187841--187886	6	7.7	6	85	0	65	36	19	2	41	1.64
187835--187886	18	2.8	19	88	8	81	38	19	1	40	1.63
187957--188029	27	2.7	26	72	6	65	50	0	2	46	1.15
190430--190510	37	2.2	37	90	0	126	38	20	16	24	1.92
190626--190674	20	2.5	20	93	0	80	24	14	30	30	1.94
190561--190731	77	2.2	77	91	0	270	29	14	22	33	1.94
190649--190788	57	2.5	57	90	0	217	27	14	22	35	1.93
190760--190808	20	2.5	20	86	0	71	26	14	28	30	1.95
190706--190887	77	2.4	77	94	0	310	27	15	23	33	1.95
190572--190860	134	2.2	134	92	0	488	27	14	22	34	1.94
190851--190910	21	2.9	21	82	2	68	28	18	23	30	1.98
191028--191074	18	2.5	19	80	13	53	57	4	2	36	1.30
191828--191903	35	2.2	35	92	0	125	35	1	23	39	1.63
192528--192605	31	2.5	31	85	0	111	33	12	29	24	1.92
192674--192747	25	3.0	24	77	16	80	20	0	8	71	1.11
192888--192917	7	4.3	7	100	0	60	43	0	13	43	1.43
193457--193516	31	1.9	31	93	0	102	26	20	15	38	1.91
196993--197141	16	9.4	16	87	2	203	20	25	12	40	1.88
197411--197461	23	2.2	24	89	3	77	49	0	3	47	1.20
197974--198123	33	4.7	33	76	15	129	43	5	6	44	1.53
198009--198057	25	2.0	25	87	0	71	40	8	8	42	1.64
198034--198180	18	8.4	18	72	15	112	40	5	7	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197982--198166	58	3.3	58	81	9	229	41	5	7	45	1.57
198034--198175	34	4.1	34	84	6	146	40	4	7	46	1.54
198073--198175	9	11.7	9	72	15	81	38	3	7	49	1.50
198239--198310	9	7.7	9	70	23	51	47	4	5	43	1.46
198234--198313	2	37.5	2	72	20	56	46	5	5	43	1.47
198306--198366	33	1.9	31	87	12	88	39	6	9	44	1.64
198342--198457	18	6.0	18	73	18	90	41	5	9	43	1.59
198317--198459	80	1.8	75	86	7	205	41	5	9	43	1.60
198287--198457	38	4.5	37	77	18	149	42	5	8	43	1.60
198317--198475	80	2.1	75	84	8	203	41	6	8	42	1.63
198514--198573	31	1.9	32	86	3	86	41	3	6	48	1.46
198644--198752	2	53.5	2	70	17	64	43	4	2	49	1.37
198601--198694	27	3.4	28	78	10	95	40	5	7	46	1.55
198644--198752	9	13.4	8	70	17	64	43	4	2	49	1.37
198644--198717	29	2.6	29	80	4	87	41	5	2	50	1.39
198671--198752	42	1.9	44	90	5	132	43	4	2	48	1.37
198837--199583	216	3.5	213	90	4	1134	29	12	7	50	1.67
200659--200698	19	2.0	20	90	4	64	40	5	25	30	1.77
204354--204387	9	3.7	9	88	4	50	50	14	8	26	1.72
204393--204783	186	2.1	185	92	0	649	45	8	3	42	1.51
206604--206672	30	2.2	30	85	15	95	34	5	17	42	1.73
206613--206672	30	2.0	30	93	6	104	33	6	16	43	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206752--206794	22	1.9	23	90	4	70	25	32	20	20	1.97
206829--206906	20	3.8	20	86	3	111	17	28	21	32	1.96
206850--206930	41	2.0	41	85	9	112	19	25	23	30	1.98
210240--210377	63	2.2	63	81	2	161	26	15	23	34	1.94
216332--216366	2	17.5	2	100	0	70	48	0	0	51	1.00
218495--218537	20	2.2	19	87	4	59	25	16	11	46	1.80
221023--221080	19	3.1	19	68	22	50	48	5	10	36	1.60
221016--221116	37	2.7	36	81	3	112	44	6	12	35	1.70
226931--227091	72	2.2	75	82	8	188	28	19	11	40	1.85
227105--227256	39	3.6	39	69	22	117	27	21	13	37	1.91
227176--227494	105	3.1	104	92	2	500	31	21	11	36	1.88
227394--227469	36	2.1	36	92	0	125	23	21	14	40	1.90
227589--228036	105	4.3	104	90	3	663	33	26	18	21	1.96
228575--228645	37	1.9	37	85	0	97	39	12	15	32	1.85
228989--229030	18	2.5	17	84	7	59	26	4	2	66	1.23
240271--240407	60	2.3	60	81	7	154	32	21	13	32	1.93
246847--246907	6	10.2	6	100	0	122	32	50	16	0	1.45
252684--252724	21	2.0	21	95	0	73	21	26	7	43	1.79
264214--264245	2	16.0	2	100	0	64	50	0	0	50	1.00
266500--266548	23	2.1	23	88	7	73	42	24	0	32	1.55
267282--267314	13	2.4	14	85	5	50	39	0	0	60	0.97
267546--267603	24	2.3	25	82	8	73	44	3	1	50	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268170--268208	17	2.4	17	91	4	62	53	2	0	43	1.14
268268--268292	11	2.3	11	100	0	50	24	0	32	44	1.54
268323--268348	9	2.9	9	100	0	52	23	7	23	46	1.78
272216--272292	30	2.6	30	87	2	102	53	11	9	25	1.67
279464--279493	14	2.1	14	93	0	51	36	6	33	23	1.81
280901--280963	31	2.0	31	96	0	117	31	9	30	28	1.89
285165--285204	12	3.4	12	86	3	55	70	10	0	20	1.16
298364--298396	17	1.9	17	93	0	57	72	0	6	21	1.05
300179--300218	13	3.3	13	80	13	50	77	0	2	20	0.88
303059--303088	10	3.0	10	95	0	51	66	0	13	20	1.24
303736--303817	41	2.0	41	90	0	128	32	19	13	34	1.91
309248--309334	36	2.4	35	78	16	88	27	18	6	47	1.74
311487--311521	18	1.9	18	100	0	70	45	5	20	28	1.73
316423--316468	13	3.5	13	85	5	65	63	8	0	28	1.24
316958--317003	21	2.2	21	88	0	65	26	26	34	13	1.92
319777--319821	23	2.0	23	86	0	63	37	4	0	57	1.19
320260--320312	21	2.5	21	84	0	70	20	26	18	33	1.96
320302--320413	20	5.6	20	81	6	129	37	20	20	21	1.94
320302--320415	61	1.9	60	90	1	183	36	20	20	22	1.95
320590--320651	18	3.0	22	69	26	62	27	38	16	17	1.91
322940--323063	20	6.5	20	80	10	143	40	20	18	20	1.92
322963--323084	34	3.4	34	77	12	136	40	20	20	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322940--323080	74	1.9	74	91	0	228	40	21	19	19	1.92
323108--323156	20	2.5	20	83	6	64	20	18	24	36	1.94
323128--323220	33	2.8	34	76	3	107	13	20	21	44	1.86
323197--323240	20	2.2	20	91	0	70	13	20	22	43	1.87
323729--323770	21	2.2	19	87	12	59	21	35	19	23	1.96
325331--325425	33	2.8	33	88	3	127	43	21	22	13	1.87
325435--325522	19	4.8	19	68	20	71	17	19	17	46	1.84
325443--325542	52	1.9	53	83	2	130	18	20	16	46	1.85
325442--325555	52	2.1	54	79	7	126	17	20	18	43	1.88
325528--325615	20	4.4	20	83	8	99	20	18	23	37	1.94
325529--325605	40	1.9	41	89	2	120	22	18	20	38	1.93
325527--325615	40	2.2	38	83	11	115	20	19	23	37	1.94
327815--327841	14	1.9	14	100	0	54	7	11	29	51	1.64
328057--328108	24	2.2	24	82	0	59	36	21	19	23	1.95
328955--329043	20	4.5	19	92	2	124	22	19	20	38	1.94
328955--329043	40	2.2	40	96	4	144	22	19	20	38	1.94
328955--329077	60	2.0	62	85	6	171	21	20	19	38	1.94
328955--329065	20	5.5	21	72	7	86	21	19	19	38	1.93
336286--336319	14	2.4	14	100	0	68	17	29	0	52	1.45
336764--336845	41	2.0	41	92	0	137	32	19	12	35	1.89
348776--348887	29	3.8	29	92	1	179	41	11	13	33	1.80
352254--352283	15	2.0	15	100	0	60	13	0	33	53	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353499--353581	29	2.8	29	85	1	112	44	9	13	32	1.76
357685--358451	139	5.6	138	85	4	985	23	18	23	33	1.97
358997--359042	13	3.5	13	85	5	65	63	6	0	30	1.20
359513--359577	21	3.1	20	82	8	60	24	23	33	18	1.96
359555--359661	42	2.5	42	73	0	97	19	16	36	27	1.93
373763--373793	10	2.9	11	95	4	55	70	0	9	19	1.14
374445--374522	41	1.9	40	92	2	129	33	20	11	34	1.89
383876--383913	19	2.0	19	100	0	76	47	21	0	31	1.51
385746--385857	29	3.8	29	93	1	188	41	11	14	32	1.81
387479--387551	15	4.9	15	83	3	103	41	6	20	31	1.79

Tables:   1   2   3   4