genome.fa.s7951.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007951.1 Hibiscus syriacus cultivar Beakdansim tig00110374_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  657610

Tables:   1   2   3   4   

This is table  3  of  4  ( 383 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387479--387551	30	2.5	30	97	2	139	41	6	20	31	1.79
387534--387583	20	2.5	20	100	0	100	40	10	16	34	1.81
387668--387766	49	2.0	50	80	9	114	48	2	0	49	1.12
387903--387974	26	2.8	25	84	16	85	56	1	0	41	1.07
387933--387968	19	1.9	18	88	5	54	58	0	0	41	0.98
387986--388083	30	3.3	29	77	17	78	48	0	1	50	1.07
388016--388058	19	2.3	19	80	8	52	55	0	0	44	0.99
387906--388058	26	5.8	26	68	22	74	52	1	0	45	1.13
388017--388069	10	5.2	11	73	15	51	52	0	0	47	1.00
388263--388377	42	2.7	42	93	0	194	47	16	18	17	1.82
392918--393688	138	5.6	138	87	2	1036	23	18	23	33	1.97
394235--394281	14	3.4	14	85	5	69	61	8	0	29	1.25
394767--394812	21	2.2	21	88	0	65	26	21	32	19	1.97
396578--396607	15	1.9	16	93	6	53	70	0	3	26	1.03
401738--401771	17	2.1	16	88	5	50	61	5	17	14	1.52
402571--402710	59	2.6	52	77	13	149	24	13	24	37	1.91
402604--402724	59	2.1	59	91	0	197	27	14	22	35	1.93
402847--402975	62	2.1	62	95	0	231	29	15	8	46	1.75
419979--420162	6	31.5	6	78	18	160	81	0	17	0	0.73
419998--420158	1	161.0	1	69	0	70	82	0	16	0	0.71
419981--420162	53	3.4	52	81	12	208	81	0	18	0	0.73
419980--420162	94	2.0	93	84	9	239	81	0	18	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419978--420162	22	8.5	22	75	17	122	81	0	17	0	0.72
421282--421342	23	2.7	23	81	0	68	31	22	24	21	1.98
421786--421821	18	1.9	19	88	5	56	25	22	0	52	1.47
424545--424787	51	4.7	52	91	2	384	37	18	22	20	1.94
424536--424788	103	2.5	102	88	3	391	37	18	21	22	1.94
426095--426130	10	3.4	10	88	11	54	47	11	19	22	1.80
426136--426581	117	3.9	115	88	5	549	38	16	21	23	1.93
426511--426568	18	3.0	21	68	19	61	48	12	20	18	1.80
426513--426575	20	3.2	20	68	8	67	42	14	20	22	1.88
426496--426667	90	1.9	91	89	3	267	43	15	18	23	1.87
426920--427269	134	2.7	133	76	11	337	27	25	17	29	1.98
427423--427478	20	2.7	22	84	13	75	33	3	1	60	1.24
429860--429897	16	2.3	17	81	4	51	26	5	7	60	1.46
432057--432099	22	2.0	22	100	0	86	37	13	25	23	1.92
441844--441885	11	3.9	11	84	6	59	21	30	26	21	1.98
447085--447116	2	16.0	2	100	0	64	50	0	0	50	1.00
457874--457900	6	4.5	6	100	0	54	14	0	0	85	0.61
458577--458616	8	5.0	8	82	11	55	22	0	0	77	0.77
458575--458609	14	2.5	13	86	13	52	20	0	0	80	0.72
459348--459393	23	2.0	24	91	4	76	6	15	19	58	1.58
462851--462908	3	19.0	3	80	16	66	34	3	0	62	1.12
466047--466078	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472887--472920	2	17.0	2	100	0	68	50	0	0	50	1.00
474384--474443	22	2.7	22	92	2	102	45	3	0	51	1.17
475027--475054	2	14.0	2	100	0	56	50	0	0	50	1.00
476638--476672	18	1.9	18	88	0	52	11	31	11	45	1.76
482088--482112	12	2.1	12	100	0	50	48	8	0	44	1.32
483258--483328	29	2.5	26	75	16	70	61	8	8	21	1.50
485328--485406	3	25.7	3	79	5	77	40	2	0	56	1.12
485328--485406	15	5.3	15	77	16	85	40	2	0	56	1.12
486805--486843	13	3.0	13	82	10	53	38	0	2	58	1.12
487467--487518	20	2.6	21	76	11	56	26	7	0	65	1.20
494557--494904	83	4.2	83	96	0	599	27	13	21	37	1.91
497493--497547	22	2.5	22	87	0	83	34	14	14	36	1.87
497977--499199	113	10.7	113	94	3	1784	37	12	20	29	1.89
498674--498718	24	1.9	23	82	13	56	48	6	26	17	1.72
499422--499512	3	29.7	3	80	4	92	40	2	0	57	1.11
500782--500819	19	2.1	19	95	5	69	18	5	5	71	1.25
505264--505621	140	2.6	137	86	3	511	22	18	24	33	1.97
505732--506173	140	3.2	137	85	5	572	36	22	17	23	1.95
510111--510137	14	1.9	14	100	0	54	29	0	0	70	0.88
517378--517409	7	4.6	7	100	0	64	28	15	43	12	1.83
518611--518646	6	6.5	6	87	12	51	52	0	0	47	1.00
518616--518646	15	2.0	16	93	6	55	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518603--518647	21	2.2	20	92	4	72	57	0	0	42	0.98
518611--518651	21	2.0	21	95	0	73	56	0	0	43	0.99
518605--518666	27	2.3	27	75	5	63	54	1	0	43	1.09
521830--522057	109	2.1	109	77	6	230	51	14	10	23	1.74
525111--525159	18	2.7	18	83	0	53	26	28	20	24	1.99
528619--528708	21	4.3	21	71	5	65	25	26	22	25	2.00
531327--531373	20	2.4	19	82	10	67	53	10	17	19	1.72
531123--531586	182	2.6	183	90	1	702	42	14	16	26	1.86
531518--531558	20	2.2	19	83	12	50	51	14	17	17	1.77
533751--533815	21	3.1	21	93	0	103	41	10	30	16	1.83
535679--535723	19	2.4	19	96	0	81	31	2	11	55	1.47
535950--536575	196	3.2	200	95	2	1126	35	15	19	30	1.92
538137--538176	6	6.7	6	82	0	53	42	7	32	17	1.77
538137--538177	12	3.4	12	89	0	64	41	9	31	17	1.82
539398--540127	176	4.1	178	87	8	1020	35	14	17	33	1.90
540010--540242	115	2.0	112	86	8	319	31	14	16	37	1.89
539851--540425	291	2.0	296	91	4	941	32	14	16	35	1.90
540123--540609	183	2.7	182	91	3	770	33	14	16	35	1.89
540301--540877	299	1.9	297	91	2	935	34	14	15	35	1.88
540484--540726	116	2.1	120	89	3	377	32	13	16	38	1.87
544177--544337	87	1.9	85	88	5	243	34	16	9	39	1.82
545527--545681	78	2.0	77	96	1	283	51	5	9	33	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552180--552311	43	3.0	44	81	9	162	25	16	8	50	1.73
552207--552321	44	2.6	45	82	9	141	25	14	9	50	1.73
554476--554519	21	2.1	21	86	0	61	38	4	0	56	1.20
561732--562378	323	2.0	324	97	0	1226	41	21	14	22	1.89
563109--563169	3	20.7	3	96	3	115	32	0	0	67	0.91
570840--570927	40	2.2	40	81	8	97	27	22	12	37	1.90
570856--570925	20	3.5	19	74	14	61	25	21	12	40	1.89
570947--570986	20	2.0	20	90	0	62	22	12	17	47	1.81
571461--571494	12	2.8	12	90	0	50	55	29	0	14	1.40
571614--571660	24	2.0	24	91	0	76	27	19	19	34	1.96
571619--571672	24	2.2	24	93	0	90	22	16	20	40	1.91
574207--574239	11	3.0	11	100	0	66	0	36	0	63	0.95
575383--575459	38	2.1	36	90	4	118	25	24	27	22	2.00
577344--577433	33	2.7	33	81	3	101	40	24	10	25	1.86
577324--577433	53	2.1	53	85	0	148	40	24	10	24	1.87
577303--577453	73	2.1	73	88	0	221	39	24	11	24	1.89
577314--577438	13	9.4	13	72	9	74	40	24	12	24	1.88
577304--577451	20	7.8	20	79	10	166	39	25	12	23	1.89
577452--577515	20	3.2	20	90	0	110	17	15	17	50	1.79
577448--577542	40	2.6	36	83	12	106	18	15	20	45	1.86
580887--580991	21	5.0	21	73	4	79	28	11	37	22	1.89
581359--581436	21	3.7	21	81	6	104	34	34	10	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581536--581659	42	3.0	42	88	3	173	24	13	36	25	1.92
582621--582686	15	4.1	16	77	11	64	19	25	31	22	1.98
582621--582686	32	2.1	32	91	0	105	19	25	31	22	1.98
582633--582692	15	3.9	15	78	8	66	20	25	31	23	1.98
584095--584189	22	4.3	22	85	7	113	22	13	47	16	1.82
584286--584373	20	4.4	20	72	11	63	32	12	26	28	1.92
584320--584458	40	3.4	40	80	7	138	36	12	23	26	1.91
584267--584437	60	2.8	59	83	1	198	37	11	24	26	1.90
584309--584437	20	6.4	20	73	10	93	37	12	24	25	1.90
586666--586699	5	6.8	5	93	0	59	55	0	0	44	0.99

Tables:   1   2   3   4