Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007951.1 Hibiscus syriacus cultivar Beakdansim tig00110374_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  657610

Tables:   1   2   3   4   

This is table  4  of  4  ( 383 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
587481--587524
21
2.1
21
100
0
88
25
27
25
22
2.00
603911--603950
21
1.9
21
85
10
55
45
2
0
52
1.14
604112--604150
2
19.5
2
100
0
78
51
0
0
48
1.00
606899--606955
18
3.1
18
85
5
78
24
0
28
47
1.52
613110--613161
21
2.5
20
87
9
70
32
11
26
28
1.91
613873--613932
23
2.7
22
82
10
61
23
15
30
31
1.95
613887--613932
21
2.1
23
84
15
62
28
17
30
23
1.97
613887--613944
21
2.6
22
82
17
59
29
15
27
27
1.96
616465--616512
21
2.5
20
86
10
64
66
0
0
33
0.92
616476--616520
21
2.2
20
88
4
63
73
0
0
26
0.84
616530--616584
21
2.6
21
94
0
92
50
16
7
25
1.70
623036--623093
25
2.3
24
80
8
62
43
1
1
53
1.21
625269--625293
12
2.1
12
100
0
50
52
16
0
32
1.44
634217--634306
32
2.9
31
90
5
128
25
16
21
36
1.94
636887--636937
17
3.0
17
97
0
93
41
21
23
13
1.89
640289--640373
19
4.4
19
96
1
152
37
15
9
37
1.80
640582--640635
2
27.5
2
96
3
101
50
0
0
50
1.00
644265--644822
55
10.1
55
90
5
395
28
24
16
30
1.96
644248--644818
221
2.6
221
90
3
868
28
24
16
30
1.96
644226--644822
276
2.2
276
90
3
929
28
24
16
30
1.97
645821--645877
19
2.8
20
79
12
64
14
12
0
73
1.09
645821--645876
28
2.0
29
89
6
89
14
10
0
75
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
645830--645889
27
2.2
27
79
5
68
10
13
0
76
1.01

Tables:   1   2   3   4

The End!