genome.fa.s7953.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007953.1 Hibiscus syriacus cultivar Beakdansim tig00110378_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  794529

Tables:   1   2   3   4   

This is table  2  of  4  ( 465 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247389--247481	33	2.8	32	91	4	150	46	27	18	7	1.76
247373--247481	19	6.3	19	71	20	85	44	28	17	9	1.79
247477--247611	19	7.6	19	75	16	128	11	19	23	45	1.82
247499--247555	14	3.7	14	77	20	60	10	21	22	45	1.82
247482--247574	33	2.8	33	95	0	168	10	20	21	47	1.80
249525--249560	14	2.6	14	95	0	63	33	0	22	44	1.53
249667--249764	19	5.4	19	84	13	143	45	17	22	14	1.84
249667--249782	53	2.2	53	98	1	225	43	18	24	13	1.86
249789--250012	19	12.8	19	76	19	247	14	21	17	46	1.84
249797--249927	33	3.8	33	88	9	208	13	22	17	46	1.83
249789--250012	52	4.3	50	85	7	254	14	21	17	46	1.84
249789--249946	71	2.2	71	98	0	307	14	21	17	46	1.83
249920--250026	33	3.2	33	83	10	155	13	20	19	46	1.83
252296--252320	12	2.1	12	100	0	50	0	28	0	72	0.86
252494--252540	24	2.0	24	87	8	69	38	21	14	25	1.92
253237--253447	20	10.6	20	86	4	255	19	19	25	35	1.96
253434--253516	21	4.0	21	73	6	78	25	16	24	33	1.96
253414--253512	42	2.4	43	77	11	100	21	18	23	37	1.94
253812--253970	60	2.9	51	75	15	147	20	25	3	49	1.65
253854--253970	60	2.0	60	87	3	173	20	25	4	49	1.67
256373--256405	2	17.0	2	87	6	50	51	0	0	48	1.00
256374--256415	19	2.2	19	86	4	57	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282418--282461	4	11.0	4	90	0	52	27	6	25	40	1.80
285393--285459	29	2.3	29	94	0	116	32	16	4	46	1.67
289200--289225	2	13.0	2	100	0	52	50	0	0	50	1.00
291515--291545	15	2.1	15	100	0	62	35	6	19	38	1.77
291855--291913	29	2.0	29	100	0	118	33	10	16	38	1.83
293469--293512	22	2.0	22	86	8	63	31	0	6	61	1.22
294078--294136	2	30.5	2	83	13	79	47	0	3	49	1.18
294411--294540	41	3.3	39	81	11	158	43	3	5	46	1.44
294407--294626	37	5.8	36	73	12	138	44	2	5	46	1.42
294407--294583	77	2.3	75	87	6	250	44	2	6	46	1.43
294467--294662	37	5.1	38	71	15	118	42	3	6	46	1.47
294704--294738	18	1.9	18	94	0	61	31	0	2	65	1.07
294705--294744	21	1.9	21	94	0	71	30	0	2	67	1.04
295733--295777	21	2.1	21	83	0	54	24	6	8	60	1.51
295820--295870	13	4.0	12	82	12	57	17	3	1	76	1.03
295937--295983	22	2.2	22	85	7	62	19	6	2	72	1.17
307960--308001	16	2.7	15	88	3	66	47	2	7	42	1.43
308058--308164	51	2.1	52	83	13	132	42	1	6	49	1.39
310402--310436	17	2.1	17	88	0	52	8	11	5	74	1.22
311615--311663	23	2.0	25	84	7	66	53	0	2	44	1.12
311976--312027	13	3.7	13	76	18	59	61	9	1	26	1.38
311970--312032	30	2.1	30	100	0	126	61	9	3	25	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311969--312016	17	3.2	15	75	18	55	64	8	4	22	1.38
311982--312032	14	3.2	17	68	21	56	60	9	1	27	1.39
313301--313363	3	21.7	3	84	12	87	65	0	0	34	0.93
313668--314229	113	5.0	114	88	2	814	28	19	14	37	1.91
313668--314229	224	2.5	227	89	1	828	28	19	14	37	1.91
315741--315787	11	4.0	12	81	13	62	4	14	0	80	0.85
315741--315784	22	2.0	22	90	0	70	4	13	0	81	0.83
319307--319337	9	3.6	9	91	8	55	54	0	22	22	1.44
323109--323140	15	2.1	15	94	0	55	46	9	18	25	1.79
326447--326510	28	2.3	27	83	8	74	59	1	6	32	1.32
326991--327039	23	2.0	25	84	7	66	53	0	2	44	1.12
328645--328722	3	26.7	3	74	10	72	58	0	0	41	0.98
332113--332141	10	2.9	10	100	0	58	20	31	27	20	1.98
334402--334520	24	5.0	24	83	4	150	26	14	20	39	1.90
337126--337189	32	2.0	32	96	0	119	29	45	6	18	1.74
337128--337185	16	3.6	17	72	11	59	27	50	3	18	1.63
346584--346631	19	2.5	20	82	3	62	29	12	6	52	1.63
347773--347814	21	2.0	21	95	0	75	26	28	21	23	1.99
347978--348039	21	3.0	20	83	9	79	14	27	37	20	1.92
347928--348011	34	2.4	34	88	4	123	20	23	35	20	1.96
358035--358152	40	3.0	40	85	3	132	39	7	5	47	1.54
358057--358152	38	2.5	40	86	3	124	42	8	5	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358960--359012	25	2.2	23	86	6	70	41	1	1	54	1.22
358960--359009	23	2.1	23	82	10	57	40	2	2	56	1.22
359105--359164	28	2.1	29	87	6	86	50	13	18	18	1.78
360487--360527	21	2.0	21	100	0	82	26	19	19	34	1.96
362695--362738	20	2.2	20	80	4	54	13	18	6	61	1.54
363794--363828	11	3.1	11	95	4	61	28	17	20	34	1.95
365926--365970	22	2.0	22	91	0	72	37	11	20	31	1.87
365928--365980	22	2.5	21	84	6	63	35	13	18	32	1.90
368278--368308	13	2.4	13	100	0	62	77	0	0	22	0.77
368821--368873	13	3.7	14	81	18	65	69	0	18	11	1.17
371392--371444	21	2.5	21	87	0	79	20	24	18	35	1.95
371434--371601	20	8.3	20	78	3	176	38	20	19	21	1.93
371451--371521	21	3.4	21	76	3	90	42	19	18	19	1.90
371434--371582	41	3.7	41	91	0	228	38	20	19	20	1.93
371434--371601	41	4.1	41	90	3	216	38	20	19	21	1.93
371595--371641	20	2.3	20	85	7	60	36	27	14	21	1.93
372483--372536	24	2.2	24	86	0	72	22	16	18	42	1.89
374968--375056	20	4.4	21	80	8	105	40	24	16	17	1.90
374968--375056	40	2.2	40	86	4	117	40	24	16	17	1.90
375028--375117	33	2.7	34	87	3	128	44	20	21	14	1.86
375160--375213	14	3.5	14	73	22	54	11	24	20	44	1.83
375138--375233	33	2.9	34	90	3	149	14	23	18	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375339--375375	14	2.6	14	86	0	56	48	21	0	29	1.50
376789--376865	21	3.7	22	77	11	65	23	16	37	22	1.94
376762--376869	42	2.5	42	76	4	110	23	19	36	21	1.95
377353--377391	20	2.0	20	100	0	78	43	20	15	20	1.88
377462--377565	20	5.2	20	94	0	163	20	18	21	40	1.92
377424--377565	40	3.7	40	82	8	163	19	19	20	40	1.91
379496--379565	20	3.5	20	84	1	97	50	21	15	12	1.78
379902--379967	22	3.0	22	90	0	105	21	15	39	24	1.91
380165--380258	20	4.7	20	76	2	98	20	18	21	40	1.92
380144--380299	61	2.6	60	74	9	154	26	17	22	33	1.96
381177--381410	42	5.8	40	78	8	145	33	19	17	29	1.95
381288--381484	42	4.8	42	78	5	186	32	19	18	28	1.96
387424--387471	21	2.3	21	100	0	96	66	8	16	8	1.42
391388--391418	15	2.1	15	100	0	62	35	19	32	12	1.90
404842--404900	12	5.1	12	70	15	52	50	0	3	45	1.18
404832--404902	34	2.1	34	100	0	142	53	0	2	43	1.15
411544--411601	30	1.9	30	89	0	89	20	20	20	37	1.94
412295--412579	142	2.0	142	88	2	430	30	17	12	39	1.87
412556--412588	16	2.0	17	88	5	50	69	12	12	6	1.35
413195--413239	19	2.4	19	96	0	81	13	26	6	53	1.64
417668--417696	2	14.5	2	100	0	58	51	0	0	48	1.00
426389--426450	20	3.1	19	68	9	52	48	0	4	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427517--427567	18	2.8	18	87	0	75	25	33	23	17	1.96
431728--431766	14	2.8	14	88	0	60	28	12	5	53	1.60
439501--440059	112	5.0	113	85	3	734	37	14	19	27	1.91
440394--440437	3	16.0	3	82	17	51	29	0	2	68	1.02
440391--440437	16	3.0	16	81	3	60	29	0	2	68	1.02
440384--440427	23	2.0	23	91	8	74	22	0	4	72	1.02
442159--442203	2	22.5	2	100	0	90	48	0	0	51	1.00
443293--443330	20	1.9	20	100	0	76	28	21	15	34	1.94
444349--444378	2	15.0	2	100	0	60	50	0	0	50	1.00
446693--446755	18	3.5	18	86	0	90	28	33	20	17	1.95

Tables:   1   2   3   4