genome.fa.s7953.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007953.1 Hibiscus syriacus cultivar Beakdansim tig00110378_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  794529

Tables:   1   2   3   4   

This is table  4  of  4  ( 465 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638800--638839	4	9.5	4	86	5	53	72	5	2	20	1.15
640762--640831	10	6.7	10	70	15	52	60	0	8	31	1.27
641226--641290	27	2.3	28	94	5	114	50	3	16	29	1.60
643744--643794	18	2.9	17	77	5	57	43	5	13	37	1.69
643743--643815	18	4.2	17	75	5	56	41	6	15	36	1.73
648599--648623	5	5.0	5	100	0	50	0	0	20	80	0.72
649085--649145	24	2.6	23	87	7	79	42	11	9	36	1.74
651866--651900	12	2.9	12	91	0	52	37	25	5	31	1.80
658270--658303	15	2.3	15	100	0	68	29	32	23	14	1.94
658435--658820	195	2.0	191	94	5	688	35	18	9	36	1.83
660992--661054	2	32.5	2	93	6	112	52	0	0	47	1.00
662708--662739	2	16.0	2	100	0	64	50	0	0	50	1.00
664713--664744	7	4.4	7	96	4	55	68	0	0	31	0.90
664707--664744	14	2.5	15	87	12	60	68	0	0	31	0.90
664707--664751	19	2.4	19	88	3	56	68	0	2	28	1.01
664861--665345	36	13.0	35	82	10	441	43	7	4	44	1.53
664860--665362	37	13.5	37	84	7	588	43	7	4	44	1.54
664861--665362	76	6.7	73	87	5	618	43	7	4	44	1.54
671320--671505	45	4.2	45	88	0	275	22	21	12	43	1.86
671608--671861	54	4.7	55	80	5	268	29	16	20	33	1.95
671608--671861	108	2.4	107	84	5	307	29	16	20	33	1.95
674093--674137	2	23.0	2	95	4	83	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
679180--679215	18	2.0	18	89	10	56	30	33	11	25	1.90
685166--685195	13	2.4	13	94	5	53	43	0	30	26	1.55
688318--688381	29	2.2	30	85	2	85	37	4	25	32	1.77
689534--689569	7	5.0	7	96	3	63	13	0	27	58	1.36
702746--702810	2	32.5	2	100	0	130	0	49	0	50	1.00
708437--708496	29	2.1	28	81	9	68	51	3	3	41	1.35
718745--718779	2	17.5	2	100	0	70	48	0	0	51	1.00
720384--720476	21	4.5	21	75	4	91	38	18	25	17	1.92
720401--720476	21	3.7	21	77	10	93	39	18	26	15	1.91
720384--720476	41	2.3	41	98	0	177	38	18	25	17	1.92
720403--720537	41	3.3	41	83	6	141	37	20	22	19	1.94
720465--720559	20	4.7	20	80	2	91	34	24	17	23	1.96
720747--720790	22	2.0	22	90	0	70	20	43	15	20	1.88
721054--721091	20	1.9	20	88	0	58	13	15	21	50	1.78
722410--722454	18	2.5	18	92	0	81	28	44	13	13	1.81
722942--723008	20	3.4	20	81	2	73	38	23	22	14	1.92
722997--723054	14	3.9	14	70	16	53	51	24	13	10	1.72
722981--723055	32	2.3	33	86	2	107	48	24	16	12	1.79
723071--723126	14	3.7	14	73	17	58	12	16	21	50	1.78
723066--723142	32	2.4	32	93	2	136	14	19	20	45	1.85
725018--725053	14	2.6	14	90	0	54	30	0	22	47	1.52
725141--725256	38	3.2	36	89	6	139	44	18	21	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725170--725275	19	5.8	19	91	8	177	47	16	21	14	1.82
725282--725337	20	2.8	20	94	0	94	17	23	23	35	1.95
726397--726450	24	2.2	24	90	0	81	24	16	20	38	1.92
726625--726649	12	2.1	12	100	0	50	72	0	28	0	0.86
728941--729071	19	7.7	19	66	23	94	42	19	22	14	1.88
728941--729067	33	3.8	33	88	4	202	42	19	22	14	1.88
728942--729074	66	2.0	66	97	0	248	41	19	22	16	1.90
729067--729109	20	2.2	20	83	4	52	18	18	20	41	1.90
729250--729286	14	2.6	14	91	0	65	45	24	0	29	1.53
730646--730712	21	3.2	21	68	4	55	19	20	35	23	1.95
730646--730768	42	2.9	41	79	7	104	23	17	36	22	1.94
732794--732892	33	3.0	33	89	1	144	39	26	23	11	1.88
732769--732972	19	11.1	19	79	13	212	44	22	22	11	1.85
732968--733048	19	4.5	19	74	16	73	9	18	24	46	1.79
733567--733619	20	2.7	20	87	0	79	28	18	28	24	1.98
733628--733681	20	2.7	20	97	0	99	25	18	24	31	1.97
733568--733684	61	1.9	61	84	3	155	24	17	24	33	1.96
733568--733702	61	2.2	61	80	5	148	23	19	24	32	1.97
733752--733792	21	2.0	21	85	0	55	34	31	17	17	1.93
735637--735770	71	1.9	71	84	0	178	32	11	10	44	1.75
735858--736014	74	2.1	74	82	2	181	38	14	5	42	1.69
735877--736122	74	3.3	73	77	5	201	35	13	6	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736506--736546	19	2.2	19	100	0	82	24	31	4	39	1.76
736589--736637	24	2.0	24	92	0	80	32	8	14	44	1.74
738578--738750	2	90.5	2	74	16	100	46	0	4	48	1.27
741239--741313	28	2.7	28	82	0	87	20	22	18	38	1.93
741530--741572	2	21.5	2	100	0	86	48	0	0	51	1.00
747479--747539	24	2.4	25	82	12	72	57	3	1	37	1.25
747523--747605	42	2.0	42	85	4	114	54	1	2	42	1.21
747507--747579	36	2.0	37	84	7	96	52	1	1	45	1.18
752640--752678	20	2.0	20	89	0	60	58	28	10	2	1.44
753438--753573	66	2.1	66	98	0	263	38	16	11	34	1.84
758004--758085	21	3.8	21	75	19	62	14	24	39	21	1.91
764421--764471	25	2.0	25	100	0	102	29	11	19	39	1.87
764920--765079	87	1.8	88	87	4	243	28	15	20	35	1.93
768674--768755	25	3.2	25	65	21	69	37	4	4	52	1.44
771756--771801	18	2.6	18	96	0	83	19	23	32	23	1.97
771824--771867	22	2.0	21	91	4	70	70	0	0	29	0.88
774273--774305	16	2.1	16	94	0	57	33	0	27	39	1.57
776871--776903	16	2.1	16	94	0	57	33	0	27	39	1.57
783443--783493	17	3.1	17	83	8	52	62	1	23	11	1.39
788806--788856	20	2.5	20	90	6	77	35	19	21	23	1.96
788825--788932	20	5.4	20	86	0	135	28	25	18	26	1.98
789748--789801	24	2.2	24	93	0	90	20	18	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
789973--790007	6	5.8	6	86	0	52	80	0	20	0	0.72
789976--790007	12	2.7	12	100	0	64	78	0	21	0	0.76
789999--790035	14	2.5	15	86	8	58	54	21	18	5	1.64
791120--791389	140	1.9	140	95	0	486	29	12	14	42	1.83
791360--791502	53	2.7	54	85	3	191	37	21	17	23	1.94
791405--791635	20	12.6	20	69	17	153	35	22	20	22	1.96
791421--791629	34	5.8	35	74	12	165	35	22	20	22	1.96
791809--791847	14	2.8	14	92	0	60	46	15	0	38	1.46
793784--793846	20	3.3	18	80	12	63	36	23	19	20	1.95
793791--793846	20	2.8	20	88	0	76	35	21	19	23	1.96
793883--793940	20	3.0	19	80	14	66	39	25	15	18	1.91
793758--793957	99	2.0	99	92	1	330	44	20	16	18	1.87
793890--793940	20	2.5	20	87	6	68	39	23	15	21	1.92
793987--794054	20	3.4	20	91	0	109	19	20	25	35	1.96
794243--794327	20	4.3	20	90	3	127	38	25	18	16	1.92
794244--794327	39	2.1	40	88	2	125	39	26	17	16	1.91
794370--794434	20	3.3	20	91	2	96	15	20	27	36	1.92

Tables:   1   2   3   4

The End!