genome.fa.s7953.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007953.1 Hibiscus syriacus cultivar Beakdansim tig00110378_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  794529

Tables:   1   2   3   4   

This is table  3  of  4  ( 465 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455559--455596	20	1.9	20	94	0	67	26	31	26	15	1.96
461447--461482	2	18.5	2	88	5	56	55	0	0	44	0.99
461740--462009	53	5.1	53	80	3	260	37	3	32	27	1.74
462730--462789	26	2.3	26	83	11	70	46	3	5	45	1.41
462755--462941	33	5.6	33	91	2	293	44	7	5	42	1.57
462742--462940	68	3.0	66	84	5	233	44	7	5	42	1.54
462892--463018	44	3.1	42	75	22	146	43	6	5	44	1.52
462826--463051	110	2.1	110	91	0	362	44	6	4	44	1.51
462758--463095	66	4.9	66	79	12	306	44	7	5	42	1.55
462936--463099	33	5.0	33	85	1	213	46	6	4	42	1.50
462962--463056	14	6.1	14	70	23	50	45	6	3	45	1.44
463164--463225	29	2.2	28	88	5	90	51	6	3	38	1.44
463177--463238	29	2.1	29	87	0	88	46	4	4	43	1.46
463235--463372	2	67.0	2	73	16	104	46	4	3	45	1.40
463185--463252	29	2.3	29	82	7	75	51	4	2	41	1.37
463250--463333	33	2.7	32	83	10	102	44	7	5	42	1.56
465796--465825	13	2.2	14	94	5	53	46	3	6	43	1.46
465900--465939	18	2.2	18	90	0	62	40	2	30	27	1.70
466383--466826	223	2.0	222	88	6	664	41	18	10	29	1.83
472546--472590	22	2.0	22	100	0	90	26	22	22	28	1.99
475331--475411	23	3.6	23	73	17	80	27	22	23	27	1.99
475329--475430	44	2.3	43	83	9	118	27	19	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480820--480979	66	2.5	63	80	10	171	28	18	23	30	1.97
483994--484050	21	2.6	23	83	11	82	17	42	22	17	1.89
487455--487498	23	2.0	23	81	4	54	50	11	2	36	1.51
487684--487724	21	2.0	21	95	0	73	26	17	29	26	1.97
487754--487793	20	1.9	21	85	10	55	37	37	10	15	1.80
488004--488073	34	2.1	32	86	5	95	32	15	28	22	1.95
490333--490373	19	2.0	22	86	13	61	39	9	7	43	1.65
501384--501442	20	2.9	21	80	14	61	77	1	8	11	1.05
501410--501465	23	2.6	21	81	13	69	78	0	12	8	0.96
501389--501464	22	3.5	21	76	18	66	78	1	10	9	1.01
501384--501465	23	3.6	21	73	16	67	78	1	9	10	1.03
505241--505281	16	2.4	19	76	23	54	68	19	2	9	1.29
506779--506819	17	2.6	16	84	7	57	41	0	12	46	1.41
506784--506826	22	2.0	20	86	8	59	46	0	9	44	1.35
510871--510898	4	7.0	4	100	0	56	50	25	0	25	1.50
511968--512001	17	2.1	16	94	5	59	58	5	17	17	1.57
518777--518844	16	4.2	16	72	23	63	66	4	7	22	1.35
518776--518844	17	4.2	17	71	14	65	66	4	7	21	1.34
518720--518842	57	2.2	56	79	5	131	61	4	8	26	1.42
523651--523852	101	2.0	101	100	0	404	23	18	23	33	1.97
524221--524333	31	3.6	31	77	5	111	39	5	1	53	1.34
524221--524310	31	2.8	31	84	3	117	44	4	0	51	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524338--524710	30	12.6	29	74	9	259	50	0	8	40	1.36
524338--524709	90	4.2	87	75	8	288	51	0	7	40	1.35
530743--530786	13	3.4	13	80	0	52	68	13	2	15	1.31
533139--533196	22	2.6	23	75	5	57	44	1	0	53	1.10
538104--538333	111	2.1	112	86	4	322	35	14	10	39	1.81
541832--541902	19	3.5	19	73	19	72	63	0	4	32	1.14
541841--541914	19	3.4	22	70	16	64	59	0	5	35	1.20
541824--541915	44	2.1	43	88	7	134	63	1	4	31	1.21
546748--546899	43	3.5	43	76	12	118	56	7	13	23	1.61
547836--547929	5	18.8	5	72	16	61	76	2	5	15	1.06
547878--547936	10	6.6	9	74	20	52	81	3	3	11	0.94
547941--547972	2	16.0	2	100	0	64	50	0	0	50	1.00
549195--549232	14	2.9	14	88	7	53	78	0	2	18	0.86
549230--549532	38	8.1	37	80	10	296	43	5	4	45	1.47
549230--549501	113	2.4	111	84	8	338	44	5	4	45	1.48
550149--550225	40	1.9	40	97	0	145	25	22	15	36	1.93
550193--551173	84	12.0	83	79	8	870	23	18	22	34	1.96
550189--551083	328	2.8	320	80	9	989	23	19	22	34	1.96
550189--551174	323	3.0	326	80	9	1059	23	18	22	34	1.96
552011--552188	90	2.0	89	86	3	250	33	19	15	32	1.93
554688--554744	15	3.8	14	73	15	51	75	3	8	12	1.16
556840--556872	7	4.9	7	85	7	50	15	3	0	81	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556833--556889	20	2.9	20	86	2	71	14	7	3	75	1.14
556915--556990	6	12.0	6	79	8	62	19	1	6	72	1.14
556915--556990	14	6.1	11	78	14	53	19	1	6	72	1.14
562636--562742	37	2.9	36	79	4	124	26	19	11	42	1.84
562714--562912	102	2.0	102	84	6	260	27	17	12	42	1.85
562898--562928	15	2.1	15	93	0	53	22	9	19	48	1.78
564707--564736	13	2.2	14	94	5	53	13	6	0	80	0.91
564783--564844	6	10.0	6	77	6	61	19	1	4	74	1.09
565531--565568	20	1.9	20	84	10	51	76	5	2	15	1.08
565536--565584	24	2.0	24	88	7	73	77	6	4	12	1.09
565469--565587	64	1.9	62	83	8	152	72	4	7	15	1.24
566845--566899	20	2.8	19	86	5	74	74	0	1	23	0.91
566851--566900	16	3.1	16	85	5	66	74	0	2	24	0.93
566848--566895	13	3.7	13	81	18	55	72	0	2	25	0.95
566927--566976	26	2.0	27	84	11	70	50	6	4	40	1.46
566918--567225	36	8.2	36	74	19	206	46	6	3	44	1.45
566904--567162	75	3.5	72	79	17	289	47	5	3	43	1.43
574602--574640	16	2.4	16	100	0	78	20	0	25	53	1.45
577263--577289	14	1.9	14	100	0	54	44	0	22	33	1.53
577561--577764	99	2.0	101	80	15	230	49	0	1	47	1.19
577737--577821	23	3.5	25	75	23	74	48	0	2	49	1.14
587190--587371	81	2.2	81	87	4	260	37	23	18	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587190--587373	20	9.1	20	74	9	158	37	23	18	20	1.94
587897--587972	20	3.7	21	75	8	61	50	18	18	13	1.78
587991--588089	19	5.1	19	84	4	108	14	22	19	44	1.86
589771--590130	94	3.8	94	95	0	623	21	13	18	46	1.83
590407--590486	42	1.9	42	84	0	106	21	38	17	22	1.93
594302--594442	60	2.3	61	81	4	151	21	18	22	36	1.95
594307--594457	40	3.7	40	79	7	162	21	18	24	35	1.95
594307--594457	20	7.4	20	81	5	126	21	18	24	35	1.95
594471--594518	20	2.4	20	86	6	62	20	16	16	45	1.85
594489--594583	21	4.6	21	71	18	65	22	22	18	36	1.95
594568--594621	20	2.7	19	75	8	63	16	18	31	33	1.93
598570--598692	45	2.7	46	88	3	205	51	17	9	21	1.74
600879--600930	15	3.2	16	72	8	52	38	0	1	59	1.08
603204--603319	51	2.3	51	96	0	214	36	12	5	45	1.65
603960--603999	13	3.1	13	92	0	71	30	10	0	60	1.30
604276--604305	13	2.2	14	94	5	53	46	6	6	40	1.56
605287--605367	41	2.0	41	87	4	119	37	13	20	28	1.91
605296--605375	41	1.9	42	89	2	126	38	8	21	31	1.84
605341--605571	83	2.8	83	75	10	213	32	13	19	34	1.91
612317--612346	12	2.5	12	100	0	60	26	6	33	33	1.83
615587--615631	22	2.0	23	83	12	58	35	11	6	46	1.66
615983--616033	21	2.4	21	90	0	75	43	15	37	3	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616354--616508	44	3.6	44	81	5	181	29	22	17	30	1.97
616404--616520	44	2.7	43	85	5	121	29	22	19	28	1.98
616574--616658	43	2.0	43	80	0	98	31	20	18	29	1.96
616922--616971	14	3.6	14	83	0	55	10	14	16	60	1.59
617280--617315	18	2.0	18	88	0	54	5	13	19	61	1.52
625050--625089	17	2.4	17	87	4	55	42	0	12	45	1.42
627900--627962	30	2.0	31	84	12	83	22	19	15	42	1.88
627944--627981	19	2.0	19	94	0	67	26	13	15	44	1.83
635744--635804	31	2.0	31	90	0	95	45	9	8	36	1.67
638085--638151	15	4.0	16	72	18	57	50	28	2	17	1.61

Tables:   1   2   3   4