genome.fa.s7959.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007959.1 Hibiscus syriacus cultivar Beakdansim tig00110386_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1044826

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 509 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272374--272438	30	2.2	29	86	13	89	16	27	26	29	1.97
272441--272510	5	12.8	5	74	16	59	18	50	22	8	1.74
272440--272517	17	4.3	17	84	15	111	17	47	23	11	1.80
272458--272510	22	2.4	22	100	0	106	18	50	22	7	1.72
272441--272517	39	2.0	39	100	0	154	18	48	23	10	1.78
274071--274097	13	2.1	13	100	0	54	7	22	7	62	1.46
275814--275848	6	5.8	6	100	0	70	51	0	14	34	1.42
279468--279622	65	2.4	65	84	3	188	32	18	20	29	1.96
279966--279995	13	2.3	13	94	0	51	46	3	10	40	1.54
282330--282403	23	3.3	22	81	7	96	28	22	22	25	1.99
282328--282428	44	2.3	43	83	8	132	27	21	22	27	1.99
285980--286021	20	2.0	21	86	4	59	26	16	9	47	1.77
288098--288254	65	2.4	65	88	2	217	31	18	22	28	1.97
291299--291378	42	1.9	42	84	5	108	43	13	8	33	1.75
291294--291381	21	4.2	21	78	5	88	40	12	10	36	1.77
293410--293468	20	2.8	21	84	7	84	30	22	27	20	1.98
293502--293546	22	2.0	22	82	4	54	31	28	26	13	1.94
294846--295053	103	2.0	103	94	0	362	27	13	22	36	1.92
295070--295178	23	4.7	23	94	0	164	18	30	25	25	1.98
298833--298891	20	2.8	21	87	7	84	30	25	27	16	1.97
300262--300474	103	2.1	103	89	0	318	27	12	22	37	1.91
300490--300581	23	4.0	23	89	0	139	19	27	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305441--305780	173	2.0	169	86	6	476	34	17	10	36	1.85
323891--324081	95	2.0	95	91	2	312	47	14	6	31	1.70
326063--327058	331	3.0	331	99	0	1974	33	19	16	30	1.94
331017--331047	15	2.1	15	93	0	53	22	6	6	64	1.40
338219--338323	23	4.7	23	81	4	99	29	23	21	24	1.99
341546--341586	20	2.2	20	86	8	59	53	2	17	26	1.56
345974--346002	13	2.3	13	94	5	51	62	0	24	13	1.32
356695--356752	23	2.7	20	70	17	53	29	15	17	37	1.90
372214--372257	23	1.9	23	90	0	70	25	27	22	25	2.00
373410--373767	45	8.0	45	82	4	384	24	18	12	44	1.85
373436--373767	135	2.5	135	87	3	472	24	18	12	44	1.84
379345--379713	45	8.2	45	80	5	358	22	20	13	43	1.87
379345--379713	90	4.1	90	80	2	411	22	20	13	43	1.87
380146--380291	44	3.2	44	67	28	122	25	23	10	40	1.87
381175--381223	19	2.6	19	87	3	73	22	38	18	20	1.93
381255--381307	20	2.7	20	96	0	97	24	20	16	37	1.93
382150--382273	59	2.1	60	86	1	169	39	16	9	34	1.81
385173--385213	18	2.3	19	87	8	59	43	2	2	51	1.28
385415--385472	25	2.3	25	100	0	116	22	22	13	41	1.89
386552--386596	2	22.5	2	100	0	90	48	0	0	51	1.00
387107--387147	3	13.7	3	89	0	64	39	0	0	60	0.96
387330--387354	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388097--388144	22	2.2	22	85	10	64	14	20	29	35	1.93
388046--388144	23	4.5	22	71	8	67	18	24	24	33	1.97
390388--390439	14	3.7	14	85	10	70	26	28	17	26	1.97
392752--392810	31	1.9	31	89	0	91	16	27	32	23	1.96
393091--393245	31	5.0	31	79	6	154	14	27	30	28	1.95
393091--393245	62	2.5	63	80	6	174	14	27	30	28	1.95
395315--395375	31	2.0	31	84	12	83	40	4	11	42	1.62
397678--397731	24	2.2	24	80	0	72	9	16	27	46	1.78
397699--397743	14	3.2	14	93	0	72	8	13	24	53	1.68
397689--397763	24	3.1	23	83	11	80	12	12	21	54	1.69
397688--397763	38	2.0	38	89	0	116	11	13	21	53	1.70
398182--398258	16	4.8	16	93	0	136	9	12	22	55	1.65
398328--398358	16	1.9	16	93	0	53	12	12	16	58	1.64
399160--399225	3	21.7	3	84	9	89	66	0	4	28	1.11
400310--400372	18	3.4	19	82	10	78	74	1	7	15	1.12
400318--400369	27	2.0	27	88	11	81	75	0	7	17	1.03
400376--400862	76	6.5	74	89	7	707	48	7	0	42	1.37
400376--400862	37	12.9	38	90	5	724	48	7	0	42	1.37
400367--400890	38	13.8	37	87	7	418	48	7	1	43	1.39
401526--402657	84	13.6	84	77	5	1055	24	19	25	30	1.98
401526--402657	249	4.5	249	87	1	1523	24	19	25	30	1.98
401478--402657	503	2.4	498	87	1	1639	24	20	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407754--407802	19	2.6	20	78	12	59	73	2	8	16	1.16
407766--407813	14	3.4	14	86	11	62	75	0	6	18	1.01
407820--408310	38	12.7	38	86	7	645	49	7	1	41	1.41
407877--408018	13	11.0	13	63	17	55	49	8	1	40	1.42
407820--408310	116	4.2	115	85	8	651	49	7	1	41	1.41
408043--408100	17	3.2	17	69	21	55	50	6	1	41	1.39
409898--409938	22	1.9	22	90	5	66	60	4	0	34	1.18
411586--411626	3	13.7	3	85	10	57	63	0	2	34	1.08
411574--411642	33	2.1	33	84	10	88	65	2	1	30	1.16
412094--412438	112	3.0	111	77	15	399	27	19	15	36	1.93
412011--412438	235	1.8	233	90	2	696	26	20	15	38	1.92
412464--412590	36	3.5	36	73	2	128	37	14	18	29	1.91
412595--412848	73	3.5	73	93	1	429	32	19	20	27	1.97
414860--414927	35	1.9	35	82	5	84	30	26	11	30	1.92
417644--417691	8	5.6	8	83	11	60	0	27	0	72	0.84
417650--417692	18	2.4	18	96	0	77	0	27	0	72	0.85
417663--417716	17	3.2	17	84	12	67	0	29	0	70	0.88
417651--417719	18	3.7	19	80	14	65	0	28	0	71	0.87
418193--418240	19	2.5	19	96	0	87	27	14	14	43	1.84
422669--422709	22	1.9	22	90	5	66	60	4	0	34	1.18
422907--422975	11	5.5	13	71	22	51	62	2	2	31	1.25
423850--423887	15	2.5	15	95	0	67	0	7	39	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424365--424390	13	2.0	13	100	0	52	69	0	0	30	0.89
426675--426716	22	1.9	22	85	9	59	26	0	4	69	1.08
426801--426831	16	1.9	16	100	0	62	32	22	12	32	1.92
427831--427871	3	13.7	3	94	0	73	63	2	0	34	1.08
427870--427905	3	12.0	3	100	0	72	33	33	0	33	1.58
441794--441901	42	2.6	42	85	4	130	33	18	20	27	1.96
441892--442349	90	5.1	90	90	2	706	34	21	17	27	1.95
441892--442349	179	2.5	180	90	2	724	34	21	17	27	1.95
442351--442481	42	3.1	42	91	2	192	31	25	19	23	1.98
442344--442452	20	5.2	21	64	15	55	32	22	19	25	1.97
442538--442608	35	2.0	36	89	8	110	26	29	18	25	1.98
442580--442848	43	6.3	43	90	0	412	28	30	14	26	1.95
442526--442848	129	2.6	129	85	5	423	29	30	14	26	1.95
442744--442813	22	3.2	22	64	18	56	28	30	14	27	1.95
444374--444568	52	3.8	51	80	7	216	23	22	17	36	1.94
444372--444568	103	1.9	103	81	6	238	22	22	17	37	1.94
445739--445798	11	5.3	11	81	15	68	0	20	0	80	0.72
445746--445798	9	5.8	9	76	12	54	0	18	0	81	0.70
445742--445797	28	2.0	28	86	6	78	0	17	0	82	0.68
453117--453174	29	1.9	31	89	6	93	32	5	18	43	1.73
453389--453428	21	1.9	21	84	0	53	32	12	27	27	1.93
456424--456469	20	2.4	19	86	10	67	26	13	8	52	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456577--456636	30	2.0	30	90	6	95	35	6	15	43	1.72
456909--456948	20	1.9	22	90	10	66	37	40	10	12	1.77
465557--465581	13	1.9	13	100	0	50	32	16	16	36	1.90
468029--468100	23	3.2	23	90	2	110	54	11	16	18	1.71
469157--469205	20	2.5	20	83	6	64	26	28	16	28	1.97
469196--469263	20	3.4	19	81	4	73	26	25	11	36	1.90
469176--469303	40	3.2	40	76	12	120	27	24	12	35	1.91
469235--469305	20	3.5	20	78	14	83	28	23	12	35	1.92
469289--469322	17	2.0	17	88	0	50	26	20	5	47	1.73
469460--469497	16	2.5	15	84	12	51	28	5	0	65	1.14

Tables:   1   2   3   4   5