genome.fa.s7959.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007959.1 Hibiscus syriacus cultivar Beakdansim tig00110386_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1044826

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 509 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1023690--1023775	4	20.2	4	72	25	54	1	23	1	74	0.96
1023678--1023775	23	4.2	24	73	16	89	1	23	1	74	0.94
1023673--1023817	19	8.2	18	73	16	74	1	22	1	74	0.97
1023678--1023816	28	4.8	29	70	20	103	0	23	1	74	0.95
1023699--1023778	40	2.0	40	81	9	94	1	23	1	73	0.97
1024053--1024086	2	17.0	2	100	0	68	50	0	0	50	1.00
1027608--1027639	15	2.0	17	88	11	50	62	9	3	25	1.40
1030108--1030212	30	3.4	29	70	14	77	43	14	4	37	1.66
1034996--1035347	20	17.5	20	84	6	383	35	25	19	19	1.95
1034954--1035347	40	9.8	40	87	6	462	36	25	19	19	1.95
1034974--1035325	121	2.9	121	87	5	498	35	25	19	19	1.95
1036204--1036257	24	2.2	24	93	0	90	20	18	20	40	1.91
1039668--1039760	42	2.2	42	80	3	107	22	16	39	21	1.92
1040238--1040306	20	3.5	20	95	0	120	39	23	20	17	1.92
1040339--1040382	19	2.3	19	92	0	70	11	15	29	43	1.82
1040368--1040430	17	3.8	17	74	17	60	11	23	20	44	1.83
1040349--1040430	19	4.8	17	75	17	62	9	21	23	45	1.81
1040519--1040897	94	4.1	94	94	2	647	46	18	13	21	1.83
1040519--1040897	187	2.0	188	94	2	674	46	18	13	21	1.83
1042622--1042749	33	3.8	33	88	1	175	42	19	22	14	1.88
1042655--1042752	19	5.7	19	67	22	81	45	20	20	13	1.84
1042759--1042869	20	5.8	20	77	13	92	11	19	18	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1043427--1043599	20	8.6	20	77	5	186	19	19	24	36	1.94
1043429--1043599	40	4.2	41	90	1	256	19	18	23	37	1.94
1043429--1043641	81	2.6	80	86	4	277	19	18	24	37	1.94
1043608--1043660	20	2.7	20	91	5	81	13	18	24	43	1.86
1044438--1044484	25	1.9	25	83	12	62	29	0	4	65	1.11
1044463--1044496	9	3.9	9	84	7	52	35	0	2	61	1.11
1044462--1044500	17	2.4	17	95	4	71	33	0	5	61	1.18

Tables:   1   2   3   4   5

The End!