genome.fa.s7963.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007963.1 Hibiscus syriacus cultivar Beakdansim tig00110392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1627826

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 819 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241655--241717	20	3.3	18	77	18	65	0	15	0	84	0.63
248911--248942	15	2.1	15	94	0	55	46	9	18	25	1.79
252930--252972	13	3.4	12	78	9	50	55	0	4	39	1.20
254382--254431	3	16.3	3	80	12	57	64	0	0	36	0.94
254382--254439	15	4.2	14	78	17	59	62	0	0	37	0.96
254869--255042	74	2.4	73	85	9	214	46	2	2	48	1.29
254895--254932	19	2.0	19	90	10	60	44	0	2	52	1.14
254868--255171	25	12.0	25	70	18	150	47	3	1	47	1.30
254979--255052	2	37.5	2	74	22	50	45	2	2	48	1.30
254868--255042	76	2.4	72	85	7	230	46	2	2	48	1.29
254979--255101	59	2.0	63	84	9	166	44	5	2	47	1.40
254868--255042	23	7.3	23	70	21	101	46	2	2	48	1.29
254944--255189	135	1.8	134	85	8	345	47	4	1	46	1.32
255998--256043	16	2.9	16	84	9	67	41	4	0	54	1.20
256174--256223	23	2.2	23	85	3	66	34	14	12	40	1.82
256216--256431	104	2.1	104	86	5	303	36	18	6	38	1.76
260138--260187	13	3.4	16	76	18	54	58	0	0	42	0.98
260119--260186	19	3.4	19	74	21	59	55	0	0	44	0.99
260118--260189	16	4.4	17	79	15	80	56	0	0	43	0.99
260118--260193	11	7.2	11	71	22	56	56	0	0	43	0.99
260120--260198	18	3.9	20	76	18	74	55	0	1	43	1.07
260343--261891	76	20.4	76	96	0	2803	34	22	19	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262738--262790	22	2.4	22	93	0	97	41	13	11	33	1.80
265230--265448	114	1.9	114	90	3	352	30	20	16	33	1.94
273565--273617	22	2.2	25	83	12	67	58	0	0	41	0.98
273613--273665	28	1.9	28	85	11	74	66	5	5	22	1.35
274883--274964	3	28.0	3	75	14	73	57	0	0	42	0.98
274883--274964	21	4.0	22	79	20	106	57	0	0	42	0.98
276266--276291	2	13.0	2	100	0	52	50	0	0	50	1.00
283576--283699	41	3.0	41	98	0	239	41	22	7	28	1.80
285772--285821	16	2.9	16	78	16	55	26	12	20	42	1.86
286033--286095	23	2.7	23	82	0	81	14	28	22	34	1.93
286041--286138	23	4.4	22	77	8	74	18	23	22	35	1.95
286087--286137	22	2.4	21	86	3	66	19	21	21	37	1.95
300526--300576	2	25.5	2	100	0	102	50	0	0	49	1.00
300526--300603	12	6.8	11	84	7	50	42	2	2	52	1.28
301800--301919	61	2.0	63	82	15	155	34	5	3	57	1.37
301937--301966	13	2.3	13	94	0	51	16	0	3	80	0.85
306018--306049	2	16.0	2	93	0	55	46	0	3	50	1.17
306053--306246	95	2.0	95	89	0	298	36	16	17	29	1.92
307580--307720	36	3.9	36	88	2	167	29	20	13	36	1.91
307605--307894	36	8.2	36	79	7	308	28	18	13	39	1.88
307604--307858	138	1.8	138	87	1	377	29	18	12	39	1.88
307610--308134	174	3.0	174	88	1	775	27	19	13	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307779--308032	138	1.8	137	85	0	355	27	19	14	39	1.90
307923--308067	37	3.9	37	83	2	175	22	22	15	39	1.92
307909--308067	73	2.2	74	84	3	207	23	21	15	39	1.91
308120--308211	37	2.6	36	92	3	150	44	16	8	30	1.77
308203--308463	84	3.1	84	81	4	265	34	24	17	22	1.96
309899--309960	3	21.0	3	83	3	72	37	0	0	62	0.95
311285--311379	27	3.8	24	76	13	77	36	0	3	60	1.13
311275--311391	24	4.5	24	75	17	85	36	0	2	60	1.10
311341--311389	21	2.2	21	82	7	62	38	0	0	61	0.96
311466--311513	24	2.1	22	88	7	69	43	2	0	54	1.12
313815--313916	35	2.9	34	81	5	107	23	11	6	57	1.58
316663--316760	1	98.0	1	77	0	79	86	0	13	0	0.56
316662--316760	7	13.0	7	87	10	117	85	0	14	0	0.59
316658--316760	8	13.2	8	88	10	142	85	0	14	0	0.60
316658--316760	31	3.3	31	89	2	154	85	0	14	0	0.60
320836--320892	22	2.6	22	94	0	96	33	17	14	35	1.90
321264--321686	112	3.8	113	90	2	658	37	14	20	27	1.91
321626--321723	39	2.6	39	93	3	173	45	8	22	23	1.79
321660--321720	17	3.4	17	67	20	52	49	6	22	21	1.72
321916--321972	17	3.4	17	74	13	64	45	10	24	19	1.81
322191--322255	3	22.0	3	80	3	69	36	0	1	61	1.05
323554--323681	27	5.1	26	74	17	110	35	0	1	62	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323753--323800	24	2.1	22	84	7	60	41	2	0	56	1.11
333425--333460	16	2.2	16	95	0	63	58	5	2	33	1.36
333598--333838	44	5.6	44	74	12	198	48	6	18	25	1.72
333797--333920	44	2.9	42	72	9	115	57	6	9	26	1.55
334249--334281	15	2.1	17	88	11	52	45	6	15	33	1.70
334319--334367	9	5.3	9	81	18	57	10	2	8	79	1.01
334320--334367	19	2.7	18	93	6	80	10	2	8	79	1.02
334224--334564	112	3.0	115	92	5	566	36	5	8	49	1.57
334435--334479	18	2.6	17	86	6	65	13	2	8	75	1.13
343321--343384	31	2.1	31	87	0	92	37	12	26	23	1.90
344893--344954	31	2.0	31	87	0	88	25	20	16	37	1.93
344997--345062	29	2.3	29	94	0	114	24	9	34	31	1.87
345539--345569	14	2.2	14	94	0	53	6	29	6	58	1.48
346219--346569	133	2.6	133	84	3	429	24	16	31	28	1.96
346573--346707	36	3.8	36	82	4	166	43	15	19	21	1.87
346854--346956	37	2.8	36	81	7	118	35	11	18	33	1.87
350320--350361	23	1.9	21	85	9	57	54	0	4	40	1.21
352007--352084	41	1.9	41	81	5	95	25	21	20	32	1.98
352113--352415	144	2.1	145	90	1	475	29	18	27	24	1.98
352392--352503	42	2.7	41	77	9	111	30	23	20	25	1.98
352640--352768	52	2.5	52	83	3	161	41	18	9	30	1.82
352792--352872	38	2.1	38	90	0	126	37	13	16	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352849--352965	37	3.1	39	73	8	109	41	10	16	32	1.82
352849--353414	76	7.4	76	86	4	693	40	11	15	32	1.83
352849--353414	228	2.5	226	86	4	764	40	11	15	32	1.83
353437--353488	15	3.2	15	70	19	50	38	11	21	28	1.88
353437--353585	37	4.1	36	85	5	212	38	12	20	28	1.89
353558--353614	30	1.9	30	96	0	105	31	10	22	35	1.88
353679--353939	36	7.1	36	75	6	177	36	10	18	35	1.85
353677--353959	74	3.9	73	84	3	311	34	9	18	36	1.84
353715--353961	110	2.2	110	79	8	245	35	9	16	38	1.82
355180--355223	23	2.0	22	86	4	61	36	18	27	18	1.94
355228--355278	22	2.4	21	74	6	50	43	23	9	23	1.83
356767--356854	44	2.0	44	100	0	176	34	13	15	36	1.87
360322--360381	23	2.6	23	78	0	57	38	21	21	18	1.94
360918--360956	17	2.2	18	86	4	53	30	5	5	58	1.41
366320--366375	23	2.5	23	88	2	78	21	19	35	23	1.96
370140--370177	20	1.9	20	100	0	76	28	5	5	60	1.40
372318--372615	152	2.0	145	94	4	524	39	11	9	38	1.74
373266--373446	10	19.4	10	81	16	119	0	11	0	87	0.60
373278--373447	8	21.2	8	84	8	190	0	10	0	88	0.57
373266--373446	17	10.8	17	84	10	207	0	11	0	87	0.60
373299--373446	44	3.4	42	86	10	208	0	8	0	91	0.46
373266--373447	15	11.2	16	83	8	192	0	10	0	87	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373291--373458	62	2.6	68	82	10	148	0	8	2	89	0.57
373299--373447	1	149.0	1	82	0	181	0	8	0	91	0.46
373291--373447	23	6.7	23	83	9	201	0	8	0	90	0.49
376767--376800	9	3.8	9	92	0	50	38	20	0	41	1.53
377362--377398	19	2.0	18	89	5	56	56	0	5	37	1.22
382934--382967	18	1.9	17	88	5	50	5	17	11	64	1.45
385083--385141	21	2.8	21	81	0	73	8	27	42	22	1.82
385398--385585	94	2.0	94	100	0	376	32	26	17	23	1.96
387598--388851	631	2.0	623	97	1	2377	31	22	17	28	1.97
390626--390739	56	2.0	56	100	0	228	31	16	27	24	1.96

Tables:   1   2   3   4   5   6   7