genome.fa.s7963.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007963.1 Hibiscus syriacus cultivar Beakdansim tig00110392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1627826

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 819 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614771--614810	15	2.7	15	88	3	55	50	0	7	42	1.30
621531--621576	4	11.5	4	86	9	67	0	73	0	26	0.83
621874--621922	20	2.5	20	83	9	57	24	0	4	71	1.03
625546--625571	2	13.0	2	100	0	52	50	0	0	50	1.00
634454--634487	2	17.0	2	87	0	50	47	2	47	2	1.32
635168--635229	31	2.0	31	100	0	124	22	6	9	61	1.50
635474--635508	18	2.1	17	89	10	54	42	0	5	51	1.25
635597--635761	60	2.7	58	79	10	163	35	12	3	47	1.59
636337--636384	25	1.9	25	83	8	62	47	0	2	50	1.12
637519--637643	62	2.0	60	96	3	232	26	20	18	35	1.95
641017--641128	35	3.2	34	87	6	154	42	22	0	33	1.60
642187--642298	35	3.2	34	88	2	152	35	0	21	41	1.59
642751--642823	25	3.1	25	88	7	109	58	0	0	41	0.98
644802--644868	33	2.0	33	94	0	116	17	16	17	47	1.83
653480--653517	20	1.9	20	88	0	58	21	23	10	44	1.83
665085--665119	17	2.1	17	88	0	52	68	0	8	22	1.16
665225--665250	13	2.0	13	100	0	52	46	0	0	53	1.00
671019--671130	58	1.9	59	83	1	145	31	24	16	28	1.96
673085--673126	21	2.0	21	90	0	66	52	4	0	42	1.22
674773--674812	16	2.5	16	83	0	53	57	0	0	42	0.98
675832--675874	16	2.7	16	100	0	86	67	0	13	18	1.23
676146--676231	2	43.0	2	97	0	163	50	1	0	48	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678494--678528	18	1.9	18	88	0	52	28	28	25	17	1.97
678511--678580	26	2.7	26	95	0	122	34	30	15	20	1.93
678663--678706	23	1.9	23	90	0	70	29	22	27	20	1.99
691686--691754	26	2.7	26	97	0	129	34	30	17	17	1.93
694450--694482	17	2.0	17	94	5	59	45	6	0	48	1.27
694468--694535	32	2.2	30	82	17	77	44	7	0	48	1.30
696901--696938	19	2.0	20	94	5	69	63	0	2	34	1.09
698613--698674	22	2.8	22	95	0	106	43	9	17	29	1.81
699619--699671	20	2.6	20	78	3	70	11	16	18	52	1.73
699808--700113	43	7.1	43	75	6	172	35	16	18	29	1.93
699910--700112	87	2.3	86	81	5	223	34	14	17	33	1.91
699910--700103	43	4.5	44	79	5	180	33	14	17	34	1.91
701001--701122	40	3.0	40	95	0	208	36	8	17	38	1.79
708132--708225	43	2.2	44	86	5	138	27	21	41	9	1.84
709125--709481	82	4.4	81	73	7	242	33	19	15	31	1.93
711874--712065	41	4.7	41	94	0	330	33	21	11	33	1.89
716250--716451	82	2.4	83	88	4	291	23	21	21	32	1.98
718748--718788	21	2.0	20	95	4	73	24	26	24	24	2.00
719421--719474	2	27.0	2	100	0	108	50	0	0	50	1.00
722086--722144	27	2.2	27	96	0	109	35	23	6	33	1.82
722590--722628	20	2.0	19	85	5	51	38	33	2	25	1.70
723864--723907	22	2.0	22	90	0	70	29	22	18	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725160--725190	14	2.2	14	100	0	62	29	12	6	51	1.65
732225--732397	95	1.8	95	97	0	328	30	17	22	30	1.97
734756--734780	12	2.1	12	100	0	50	44	16	0	40	1.47
735089--735151	21	3.0	20	80	15	74	28	25	19	26	1.98
735089--735151	22	2.9	22	84	11	78	28	25	19	26	1.98
736919--737105	31	6.0	31	89	2	254	37	20	20	21	1.95
736919--737105	62	3.0	62	91	3	288	37	20	20	21	1.95
737926--737970	21	2.1	21	87	0	63	15	24	28	31	1.96
740893--741079	31	6.0	31	89	2	263	37	21	20	20	1.95
740893--741079	62	3.0	62	92	3	297	37	21	20	20	1.95
741257--741303	23	2.0	24	91	4	78	36	19	0	44	1.51
741904--741948	21	2.1	21	87	0	63	15	24	28	31	1.96
742728--742765	17	2.2	17	100	0	76	28	23	10	36	1.88
742728--742780	17	3.0	17	88	5	61	26	28	13	32	1.93
745324--745380	17	3.6	16	76	9	62	45	10	12	31	1.76
745549--745601	21	2.5	21	93	0	88	28	28	22	20	1.99
745797--745851	13	4.2	13	75	13	58	49	12	3	34	1.59
745837--745935	33	3.0	33	94	1	164	45	15	7	32	1.73
745930--745969	21	1.9	21	94	0	71	47	7	15	30	1.72
748978--749773	414	1.9	411	88	4	1075	43	8	8	38	1.66
749567--749891	180	1.8	180	80	2	393	39	11	9	39	1.75
753274--753448	95	1.8	95	97	0	332	30	16	23	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
754778--755031	84	3.0	84	96	2	456	31	22	22	24	1.98
756984--757158	86	2.0	86	92	4	291	32	21	21	24	1.98
759176--759349	85	2.0	86	92	1	287	32	20	22	24	1.98
763967--764248	2	151.5	2	71	23	199	53	2	0	42	1.19
763933--764259	7	46.7	7	72	20	192	54	2	0	41	1.21
763941--764246	85	3.8	78	71	19	159	54	2	0	42	1.19
763927--764281	94	3.9	94	76	17	301	54	2	1	41	1.22
772597--772652	23	2.4	23	84	0	76	12	23	25	39	1.89
776506--776564	23	2.7	21	80	10	64	18	20	28	32	1.96
776525--776604	23	3.5	23	82	1	99	16	21	28	33	1.95
780590--780619	12	2.5	12	94	0	51	70	3	3	23	1.18
782523--782566	21	2.1	21	86	0	61	29	27	27	15	1.96
782593--782636	22	2.0	22	86	0	61	31	31	27	9	1.88
785977--786301	9	39.0	8	70	22	126	56	2	0	40	1.19
785995--786245	12	19.8	13	72	20	92	55	2	1	41	1.20
786023--786301	2	154.5	2	67	27	155	55	2	0	41	1.18
785981--786297	19	17.2	18	72	21	168	55	2	0	40	1.19
785994--786312	7	46.0	7	73	21	214	54	3	0	41	1.22
786013--786329	20	17.1	19	71	26	111	54	3	0	40	1.25
791991--792016	13	2.0	13	100	0	52	38	7	15	38	1.76
794018--794042	2	12.5	2	100	0	50	52	0	0	48	1.00
795518--795576	3	20.7	3	77	19	56	27	1	0	71	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
795521--795573	13	4.0	13	77	18	56	26	1	0	71	0.96
795605--795637	2	16.5	2	93	0	57	48	3	0	48	1.17
795842--795872	14	2.2	14	94	0	53	19	0	0	80	0.71
795845--795890	24	2.0	22	84	12	58	17	4	0	78	0.91
796013--796052	16	2.3	18	87	8	57	15	7	2	75	1.14
798591--798647	20	3.1	18	78	14	62	56	0	1	42	1.10
798864--798897	2	17.0	2	100	0	68	50	0	0	50	1.00
799160--799195	13	2.8	12	88	12	54	50	0	0	50	1.00
801814--801848	10	3.5	10	84	0	52	31	25	0	42	1.55
801871--801938	26	2.7	25	80	17	79	29	1	0	69	0.98
801892--801935	16	2.8	16	86	3	54	29	2	0	68	1.02
819869--819909	14	2.9	14	96	0	73	36	17	12	34	1.87
819849--819886	20	1.9	20	88	0	58	39	13	15	31	1.86
820012--820125	35	3.3	35	88	2	167	19	25	21	34	1.96
822923--822957	2	17.5	2	100	0	70	48	0	0	51	1.00
825814--825872	14	4.2	14	82	0	64	59	18	10	11	1.60
829146--829207	30	2.1	30	96	0	115	33	24	4	37	1.77
832452--832529	25	3.2	25	71	23	69	24	2	1	71	1.06
832525--832618	36	2.6	35	82	14	95	22	6	3	68	1.27
835808--835852	13	3.5	13	93	0	72	86	0	6	6	0.70
835808--835874	19	3.4	18	78	13	53	82	1	8	7	0.92
837521--837595	37	2.0	38	86	2	107	29	21	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
837602--837688	37	2.4	37	86	1	113	24	21	12	41	1.88
837515--837891	102	3.7	102	87	1	470	28	19	12	39	1.88
837709--837770	21	3.2	21	63	25	55	25	17	12	43	1.85
837704--837936	36	6.6	36	77	10	221	26	19	12	41	1.87
837515--837891	203	1.9	204	82	2	490	28	19	12	39	1.88
837720--837983	138	1.9	138	87	1	386	26	20	12	41	1.87
837814--837931	37	3.2	36	81	3	137	27	22	12	37	1.90
838712--838969	110	2.4	107	83	4	315	34	24	18	22	1.97
840339--840387	14	3.5	14	83	10	57	30	2	0	67	1.02
840296--840387	28	3.2	29	73	16	75	30	5	0	64	1.16

Tables:   1   2   3   4   5   6   7