genome.fa.s7963.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007963.1 Hibiscus syriacus cultivar Beakdansim tig00110392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1627826

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 819 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1437255--1437317	2	31.5	2	100	0	126	50	0	0	49	1.00
1438251--1438292	13	3.2	13	75	18	50	57	4	2	35	1.33
1439031--1439079	19	2.5	21	80	12	59	42	0	2	55	1.11
1451835--1451869	2	17.5	2	93	0	61	51	2	0	45	1.16
1452167--1452225	25	2.3	25	88	2	82	40	8	13	37	1.75
1452472--1452501	4	7.8	4	92	7	53	76	0	0	23	0.78
1458945--1458971	6	4.5	6	100	0	54	0	51	0	48	1.00
1461051--1461094	2	22.0	2	85	0	52	40	0	6	52	1.28
1461052--1461094	12	3.6	12	87	0	59	39	0	6	53	1.28
1461051--1461096	10	4.6	10	91	0	65	39	0	8	52	1.33
1466628--1466656	13	2.1	14	93	6	51	55	0	0	44	0.99
1468914--1468951	15	2.5	15	100	0	76	34	13	21	31	1.91
1472521--1472585	23	2.8	23	85	0	76	21	29	21	27	1.99
1475022--1475082	19	3.3	19	73	17	74	1	16	31	50	1.55
1481086--1481110	6	4.2	6	100	0	50	36	16	16	32	1.90
1487381--1487447	30	2.2	30	78	2	71	52	2	1	43	1.25
1488316--1488354	15	2.5	16	83	8	53	17	23	25	33	1.96
1488406--1488462	15	3.7	15	81	9	78	15	28	35	21	1.94
1488394--1488462	32	2.2	32	94	0	120	18	27	31	21	1.97
1492487--1492576	31	2.8	31	88	8	128	34	20	18	26	1.96
1492650--1492709	21	2.9	21	84	0	84	43	20	5	31	1.73
1497777--1497993	64	3.4	63	83	3	222	35	18	18	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1497819--1497997	64	2.8	64	87	1	243	35	20	18	25	1.95
1498654--1498809	31	5.0	31	96	1	278	19	19	23	38	1.93
1501499--1501565	30	2.2	31	83	2	82	35	26	19	17	1.94
1501511--1501608	31	3.2	30	79	2	97	34	24	18	22	1.96
1501525--1501649	31	4.0	32	79	9	123	33	20	18	27	1.96
1501525--1501648	63	2.0	62	85	7	171	33	20	18	27	1.96
1502191--1502510	160	2.0	160	99	0	631	30	21	13	34	1.92
1503435--1503587	45	3.4	45	94	1	263	41	5	20	32	1.75
1504615--1504754	36	3.9	36	90	6	214	50	12	5	31	1.64
1507534--1507559	2	13.0	2	100	0	52	50	0	0	50	1.00
1515083--1515144	32	1.9	32	90	0	97	16	32	19	32	1.94
1521087--1521122	14	2.6	14	95	0	63	52	8	8	30	1.61
1523663--1523808	21	7.0	21	72	16	115	21	20	22	34	1.96
1523669--1523808	42	3.3	42	95	0	244	22	20	22	35	1.96
1523894--1523933	6	7.2	6	91	8	59	32	50	17	0	1.47
1524561--1524634	21	3.6	21	72	17	64	33	24	18	22	1.97
1524643--1524688	21	2.2	21	96	0	83	21	21	26	30	1.99
1526467--1526516	18	3.0	16	75	11	55	48	0	0	52	1.00
1530468--1530525	19	3.2	18	79	11	66	44	0	1	53	1.10
1530474--1530526	16	3.1	17	81	8	63	49	0	0	50	1.00
1530639--1530796	21	7.8	20	72	7	86	38	25	17	18	1.92
1530763--1531012	20	12.5	20	87	1	268	37	24	18	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1531693--1531739	24	2.0	24	87	8	69	25	14	21	38	1.92
1531913--1531937	12	2.1	12	100	0	50	72	0	28	0	0.86
1534273--1534370	19	5.4	19	84	13	143	14	22	17	45	1.84
1534254--1534370	53	2.2	53	98	1	227	13	23	17	44	1.85
1534447--1534501	14	3.6	14	73	21	56	47	18	23	10	1.80
1534429--1534520	33	2.8	33	94	1	157	45	17	23	13	1.83
1534429--1534577	19	8.6	19	71	21	130	44	17	22	15	1.86
1534461--1534577	52	2.2	52	93	0	198	45	17	21	16	1.85
1534584--1534683	19	5.5	19	82	12	138	15	22	17	46	1.84
1534567--1534683	53	2.2	53	90	1	191	15	23	17	44	1.86
1534790--1534825	14	2.6	14	86	4	56	44	22	0	33	1.53
1536740--1536832	33	2.8	33	96	0	177	48	20	20	10	1.79
1536759--1536815	14	3.7	14	79	20	69	47	21	21	10	1.80
1536703--1536837	19	7.6	19	78	16	137	46	22	19	11	1.81
1536703--1536837	52	2.5	54	77	18	140	46	22	19	11	1.81
1536833--1536961	19	7.3	19	75	17	125	8	17	28	45	1.77
1536833--1536924	33	2.8	33	93	3	150	7	18	28	45	1.76
1537005--1537477	93	5.1	93	98	0	921	45	19	12	22	1.83
1537005--1537477	185	2.5	186	98	0	921	45	19	12	22	1.83
1539176--1539265	14	5.7	14	74	23	81	42	23	25	8	1.83
1539168--1539282	33	3.5	33	95	0	212	45	20	24	9	1.81
1539175--1539287	19	6.8	18	72	23	88	43	22	24	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1539299--1539352	14	3.5	14	73	22	54	7	25	24	42	1.80
1539283--1539363	33	2.5	33	93	0	135	7	23	22	46	1.76
1539339--1539416	41	1.9	41	94	0	138	11	26	16	44	1.82
1539340--1539415	21	3.7	21	82	3	100	10	26	17	46	1.80
1539517--1539566	16	3.0	18	69	22	54	44	22	22	12	1.85
1539498--1539566	32	2.2	32	89	0	102	46	18	23	11	1.82
1539746--1539800	22	2.5	22	81	0	74	20	16	40	23	1.91
1539946--1540139	20	9.6	20	81	5	212	19	19	25	35	1.95
1539946--1540139	60	3.2	60	82	0	244	19	19	25	35	1.95
1540126--1540208	21	4.0	21	73	6	78	25	16	24	33	1.96
1540106--1540204	42	2.4	43	77	11	100	21	18	23	37	1.94
1540712--1540761	26	1.9	26	84	8	66	56	20	8	16	1.65
1542609--1542633	4	6.2	4	100	0	50	0	24	0	76	0.80
1546782--1546861	38	2.1	38	95	0	142	23	21	8	46	1.79
1551826--1551893	27	2.6	27	93	4	113	32	10	16	41	1.82
1555573--1555640	27	2.6	27	95	4	122	30	11	16	41	1.84
1560290--1560321	16	2.1	16	94	5	57	65	0	21	12	1.25
1566792--1566856	31	2.1	31	94	0	112	26	27	12	33	1.92
1568044--1568102	30	2.0	30	100	0	118	38	16	20	23	1.92
1569282--1569356	31	2.4	31	93	0	123	36	16	24	24	1.94
1571814--1571865	19	2.9	18	78	15	56	38	0	0	61	0.96
1586725--1586772	17	2.9	16	87	3	60	60	2	2	35	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1587253--1587302	17	2.9	17	80	16	50	58	2	0	40	1.10
1597450--1597485	18	2.0	18	88	0	54	30	8	16	44	1.77
1599505--1599781	36	7.7	36	97	0	491	29	23	28	18	1.97
1609555--1609602	16	2.8	18	81	12	57	25	6	4	64	1.35
1612388--1612441	20	2.8	20	91	5	85	48	18	3	29	1.65
1612509--1612547	8	4.9	8	87	12	62	64	7	0	28	1.21
1612510--1612555	24	1.9	24	91	8	76	63	6	0	30	1.20
1612509--1612555	16	2.9	16	93	6	78	63	6	0	29	1.19
1616821--1616864	23	1.9	23	85	0	61	27	18	9	45	1.79
1627547--1627634	29	3.0	29	95	3	158	32	23	19	23	1.97
1627547--1627635	30	3.0	30	96	1	162	33	23	19	23	1.97

Tables:   1   2   3   4   5   6   7

The End!