genome.fa.s7978.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007978.1 Hibiscus syriacus cultivar Beakdansim tig00110415_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1479011

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 755 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224940--224998	19	2.8	22	85	10	70	42	1	3	52	1.28
224990--225044	23	2.3	24	81	9	67	50	0	1	47	1.11
228472--228800	182	1.8	182	83	2	446	29	16	16	37	1.90
234002--234088	37	2.3	38	82	9	97	54	2	8	35	1.43
239114--239148	3	11.7	3	100	0	70	31	0	0	68	0.90
247957--248000	19	2.3	19	84	7	54	36	13	13	36	1.85
257500--257529	13	2.3	13	94	0	51	36	0	0	63	0.95
264343--264380	20	1.9	20	84	10	51	21	23	10	44	1.83
265336--265371	19	1.9	19	88	5	56	61	8	5	25	1.46
267711--267764	22	2.5	22	96	0	99	42	0	3	53	1.18
273095--273153	21	2.8	21	86	0	82	52	20	5	22	1.65
276793--277027	41	5.7	40	77	9	188	36	19	15	28	1.92
276825--277027	84	2.5	82	80	6	230	35	18	15	30	1.92
277870--277907	13	2.8	14	84	8	51	31	7	5	55	1.51
281548--281582	2	18.0	2	94	5	63	51	0	0	48	1.00
281635--281661	14	1.9	14	100	0	54	44	0	0	55	0.99
283770--283809	19	2.1	19	90	9	64	75	2	0	22	0.93
286685--286715	4	7.8	4	100	0	62	48	0	25	25	1.52
288431--288474	23	1.9	23	100	0	88	31	9	25	34	1.87
289584--289631	20	2.4	20	92	0	78	29	25	10	35	1.89
296734--296775	20	2.0	21	95	4	77	52	9	0	38	1.34
299973--300004	2	16.5	2	93	6	57	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300736--300790	28	1.9	29	85	3	76	45	10	12	30	1.77
317081--317190	41	2.6	41	75	5	105	36	16	17	30	1.92
317924--317981	27	2.3	27	85	11	79	37	15	17	29	1.90
322568--322603	13	2.6	14	86	8	56	58	0	5	36	1.22
323661--323819	41	3.8	40	73	14	135	31	16	22	30	1.95
323724--323857	41	3.3	39	76	12	108	31	18	20	29	1.97
323656--323857	82	2.5	84	76	11	204	31	16	20	30	1.95
324286--324310	13	1.9	13	100	0	50	8	32	4	56	1.47
327708--327818	44	2.5	44	83	2	134	28	23	19	27	1.98
327743--327848	44	2.4	44	83	0	131	25	27	18	28	1.98
328001--328037	14	2.7	14	84	15	51	10	24	32	32	1.90
328370--328408	21	1.9	21	89	5	62	35	0	0	64	0.94
337259--337304	10	4.6	10	78	10	58	15	19	28	36	1.92
337308--337401	13	7.2	13	77	20	83	17	46	23	12	1.82
337307--337401	30	3.0	31	92	7	147	16	47	23	12	1.81
344487--344522	11	3.6	10	88	11	56	13	22	30	33	1.93
344525--344601	17	4.4	18	95	4	140	16	49	23	10	1.77
344525--344601	35	2.2	35	100	0	154	16	49	23	10	1.77
344526--344606	13	6.2	13	74	23	57	17	46	23	12	1.81
349198--349476	45	6.2	44	84	4	256	36	10	23	29	1.87
349230--349476	90	2.8	89	77	9	293	36	10	23	29	1.88
352014--352314	121	2.5	122	82	5	358	42	7	19	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354849--354879	15	2.1	15	93	0	53	41	3	41	12	1.59
372261--372326	30	2.2	30	91	2	105	33	12	16	37	1.86
378039--378095	29	1.9	30	85	3	80	49	3	12	35	1.58
379334--379581	60	4.1	60	98	0	478	30	3	26	39	1.72
385563--385631	23	3.0	23	83	14	72	69	5	1	23	1.18
385595--385657	23	2.7	23	82	9	65	71	3	4	20	1.18
388625--388765	73	1.9	74	88	1	212	28	11	15	44	1.81
389164--389190	2	13.5	2	100	0	54	48	0	0	51	1.00
394383--394499	60	2.0	60	84	0	153	41	16	10	31	1.81
397854--397879	2	13.0	2	100	0	52	50	0	0	50	1.00
400392--400538	29	5.1	29	92	0	186	23	39	23	13	1.90
400578--400638	32	1.9	32	96	0	113	14	31	27	26	1.95
400628--400671	23	1.9	23	90	0	70	25	20	27	27	1.99
401091--401152	28	2.1	30	94	5	110	30	0	12	56	1.37
404650--405002	49	6.4	49	75	21	246	41	0	13	45	1.43
404757--405362	49	11.6	48	80	15	470	41	0	11	46	1.42
404646--405119	60	8.2	60	89	6	730	41	0	13	45	1.45
404864--404950	10	8.7	10	73	20	58	41	0	13	44	1.44
404766--405362	98	5.7	98	83	13	637	41	0	11	46	1.42
404864--405071	21	10.4	20	64	17	67	41	0	13	44	1.47
405054--405362	49	6.3	49	90	4	484	41	0	11	47	1.39
405111--405184	21	3.2	21	66	23	58	43	0	9	47	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405119--405195	22	3.3	22	67	22	66	41	0	9	49	1.34
404646--405308	288	2.4	281	87	9	941	41	0	12	46	1.43
405330--405381	14	3.9	14	80	14	56	34	0	15	50	1.45
407761--407847	43	2.0	45	86	4	124	47	12	1	39	1.49
408045--408084	20	2.1	19	85	4	53	0	37	0	62	0.95
408045--408086	16	2.8	15	82	10	50	0	38	0	61	0.96
408178--408243	33	2.0	33	94	2	116	27	28	12	31	1.92
408396--408477	29	2.8	29	83	0	101	15	20	40	23	1.91
408850--411231	4	599.8	4	91	1	3286	43	24	6	25	1.77
411770--411977	103	2.0	103	96	0	380	38	2	13	45	1.59
418931--418959	15	1.9	15	100	0	58	41	10	20	27	1.85
420162--420206	22	2.0	22	100	0	90	33	13	17	35	1.89
420836--420867	16	2.0	16	100	0	64	37	12	31	18	1.88
422083--422115	5	6.8	5	89	3	50	0	15	3	81	0.80
426052--426404	183	1.9	183	95	0	634	27	20	20	30	1.98
427580--427763	36	5.1	36	65	5	111	28	19	13	38	1.89
427552--427807	72	3.5	72	82	7	295	28	18	13	39	1.89
427827--427981	65	2.4	65	80	2	186	29	20	10	40	1.86
427877--428226	102	3.5	102	83	2	314	29	18	12	39	1.88
427772--428100	167	2.0	166	91	0	532	28	18	12	40	1.86
428044--428129	37	2.4	37	86	2	111	25	20	15	38	1.92
428301--428374	36	2.1	34	90	7	114	39	17	9	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429033--429190	84	1.9	85	84	4	212	31	22	19	26	1.98
430445--430483	18	2.2	18	85	0	51	15	2	2	79	0.95
431281--431315	4	8.8	4	100	0	70	25	0	0	74	0.82
432613--432637	2	12.5	2	100	0	50	52	0	0	48	1.00
434854--434886	17	1.9	17	100	0	66	30	9	18	42	1.81
435984--436008	2	12.5	2	100	0	50	52	0	0	48	1.00
437750--437777	2	14.0	2	100	0	56	50	0	0	50	1.00
440407--440450	2	22.0	2	100	0	88	50	0	0	50	1.00
441064--441103	19	2.1	19	85	4	53	30	5	0	65	1.14
442066--442141	20	3.8	19	71	8	62	23	21	13	42	1.88
442064--442149	20	4.3	19	68	19	59	25	20	12	40	1.88
442064--442162	40	2.5	40	86	3	128	25	20	14	40	1.89
442202--442249	20	2.4	20	86	6	62	31	25	10	33	1.89
442329--442440	20	5.6	20	82	4	136	27	12	23	36	1.91
442332--442463	40	3.3	40	78	4	124	29	13	20	36	1.91
442332--442466	60	2.2	60	82	2	173	30	13	20	35	1.91
442432--442511	40	2.0	40	85	0	106	35	15	20	30	1.93
442669--442693	13	1.9	13	100	0	50	40	8	16	36	1.77
442694--442731	19	2.0	19	94	0	67	44	0	10	44	1.38
443556--443813	140	1.9	139	85	4	351	32	14	14	38	1.87
447084--447172	29	3.0	28	75	12	81	40	12	1	46	1.49
452997--453058	29	2.1	30	82	8	74	17	11	14	56	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453588--453647	19	3.0	20	75	7	59	48	0	0	51	1.00
470656--470717	21	2.7	23	80	11	83	35	19	17	27	1.94
474425--474530	4	24.8	4	70	14	52	63	4	3	28	1.32
474426--474530	32	3.3	33	74	11	96	62	4	3	28	1.33
475780--475818	2	20.0	2	89	5	62	51	0	2	46	1.14
480641--480669	9	3.3	9	95	4	51	20	0	0	79	0.74
480638--480685	16	2.9	16	81	6	51	31	2	0	66	1.03
482379--482424	3	15.0	3	95	4	83	65	0	0	34	0.93
506770--506829	29	2.1	29	100	0	120	43	10	16	30	1.81
508030--508066	20	1.9	19	89	10	58	45	5	24	24	1.74

Tables:   1   2   3   4   5   6   7