Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007978.1 Hibiscus syriacus cultivar Beakdansim tig00110415_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1479011

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 755 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1430274--1430329
20
2.8
20
81
10
78
16
23
19
41
1.90
1430274--1430336
20
3.2
20
76
13
67
15
22
17
44
1.86
1432008--1432241
95
2.5
95
90
0
389
22
12
18
47
1.82
1434125--1434160
14
2.6
14
95
0
63
33
0
22
44
1.53
1434267--1434351
19
4.7
19
77
16
92
47
20
20
12
1.82
1434316--1434356
19
2.2
19
90
0
64
53
21
12
12
1.70
1434357--1434528
19
9.7
19
70
20
140
13
23
19
43
1.86
1434359--1434568
106
2.0
106
88
1
314
14
23
20
41
1.89
1434486--1434513
14
2.0
14
100
0
56
14
21
21
42
1.88
1434361--1434541
73
2.6
66
84
10
245
13
23
19
43
1.87
1434361--1434541
33
5.3
33
84
9
236
13
23
19
43
1.87
1434534--1434607
20
3.7
20
69
16
62
24
17
25
32
1.97
1437077--1437130
24
2.2
24
93
0
90
40
20
18
20
1.91
1437077--1437144
24
2.8
24
84
0
64
38
20
17
23
1.93
1437995--1438033
20
2.0
20
90
10
62
35
23
17
23
1.95
1438004--1438064
19
3.1
20
85
4
79
36
18
19
26
1.94
1438028--1438070
19
2.3
19
100
0
86
30
18
20
30
1.97
1438040--1438116
20
3.9
20
86
1
102
23
19
22
35
1.96
1438113--1438158
21
2.2
21
88
0
65
36
17
28
17
1.92
1440143--1440180
21
2.0
21
85
15
55
50
7
2
39
1.46
1440676--1440711
4
8.8
4
93
6
63
47
0
0
52
1.00
1443805--1443845
21
1.9
22
85
5
57
43
14
14
26
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1445766--1445803
11
3.5
11
79
13
51
78
0
0
21
0.74
1445922--1445970
17
2.9
16
84
6
62
71
2
0
26
0.97
1449179--1449217
5
7.8
5
91
0
51
2
41
33
23
1.68
1449215--1449317
6
17.2
6
97
0
179
2
16
49
31
1.60
1449595--1449649
22
2.5
22
75
0
56
29
9
23
38
1.85
1455180--1455218
5
7.8
5
91
0
51
2
41
33
23
1.68
1455216--1455315
6
17.2
6
92
6
152
3
17
49
31
1.61
1455593--1455647
22
2.5
22
75
0
56
29
9
23
38
1.85
1456480--1456510
14
2.2
14
94
0
53
51
6
22
19
1.69
1458556--1458620
25
2.7
25
76
6
73
6
27
3
63
1.33
1463932--1463959
14
2.0
14
100
0
56
57
14
14
14
1.66
1477126--1477179
26
2.1
27
82
10
76
31
5
14
48
1.67
1478330--1478750
209
2.0
213
84
7
552
48
15
14
21
1.81

Tables:   1   2   3   4   5   6   7

The End!