genome.fa.s7992.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007992.1 Hibiscus syriacus cultivar Beakdansim tig00110442_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1314873

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 534 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5137--5177	14	2.8	14	92	7	64	80	9	9	0	0.91
5128--5180	24	2.3	21	84	12	61	83	7	7	1	0.89
5154--5191	20	1.9	20	88	0	58	78	10	10	0	0.95
14417--14482	13	5.5	11	74	22	62	33	34	3	28	1.73
14405--14499	36	2.7	36	95	1	165	31	34	4	29	1.77
22823--22854	16	2.0	16	100	0	64	31	18	6	43	1.75
24260--24311	17	2.9	18	81	18	65	73	5	19	1	1.14
24267--24338	11	6.5	11	75	12	58	75	2	20	1	1.01
24262--24335	5	15.8	5	71	18	61	75	2	20	1	1.00
24262--24328	8	7.9	8	74	22	57	74	2	20	1	1.03
24262--24327	16	3.8	17	79	16	66	74	3	21	1	1.04
24262--24335	13	5.3	15	70	16	61	75	2	20	1	1.00
24303--24335	16	2.1	16	94	5	59	78	0	21	0	0.75
26434--26465	16	2.0	16	100	0	64	31	18	6	43	1.75
27869--27920	17	2.9	18	81	18	65	73	5	19	1	1.14
27876--27947	11	6.5	11	75	12	58	75	2	20	1	1.01
27871--27944	5	15.8	5	71	18	61	75	2	20	1	1.00
27871--27937	8	7.9	8	74	22	57	74	2	20	1	1.03
27871--27936	16	3.8	17	79	16	66	74	3	21	1	1.04
27871--27944	13	5.3	15	70	16	61	75	2	20	1	1.00
27912--27944	16	2.1	16	94	5	59	78	0	21	0	0.75
32756--32787	16	2.0	16	100	0	64	31	18	6	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34207--34273	11	6.9	10	75	25	56	77	0	22	0	0.77
34219--34273	8	7.0	8	89	10	78	78	0	21	0	0.76
34213--34273	16	3.9	15	87	8	86	77	0	22	0	0.78
34213--34273	31	1.9	32	87	9	90	77	0	22	0	0.78
36352--36383	16	2.0	16	100	0	64	31	18	6	43	1.75
40397--40456	19	3.2	18	83	6	68	3	16	5	75	1.12
40710--40753	20	2.2	20	84	8	54	61	2	15	20	1.45
50620--50674	24	2.3	24	75	9	60	67	10	14	7	1.41
51922--51973	24	2.2	24	82	0	59	28	21	19	30	1.97
55913--55973	25	2.4	25	76	17	63	9	13	14	62	1.55
61035--61094	30	2.0	31	86	3	86	28	8	10	53	1.63
82281--82323	23	1.9	21	81	13	50	34	13	18	32	1.90
88751--88830	35	2.2	37	91	4	128	27	3	37	31	1.74
92616--92667	17	2.9	18	81	18	65	73	5	19	1	1.14
92623--92694	11	6.5	11	75	12	58	75	2	20	1	1.01
92618--92691	5	15.8	5	71	18	61	75	2	20	1	1.00
92618--92684	8	7.9	8	74	22	57	74	2	20	1	1.03
92618--92683	16	3.8	17	79	16	66	74	3	21	1	1.04
92618--92691	13	5.3	15	70	16	61	75	2	20	1	1.00
92659--92691	16	2.1	16	94	5	59	78	0	21	0	0.75
98057--98109	17	3.1	18	78	15	67	71	0	13	15	1.14
98057--98109	16	3.4	16	78	17	58	71	0	13	15	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98722--98801	35	2.2	37	91	4	128	27	3	37	31	1.74
100507--100550	21	2.0	22	95	4	81	45	13	22	18	1.84
106700--106731	16	2.0	16	100	0	64	31	18	6	43	1.75
109186--109215	15	2.0	15	93	0	51	13	30	20	36	1.90
118980--119019	19	2.0	20	90	4	64	20	15	0	65	1.28
119277--119325	20	2.5	19	80	9	53	75	4	18	2	1.06
119274--119333	18	3.4	17	75	18	61	76	3	18	1	1.00
120475--120656	90	2.0	91	91	1	294	27	23	28	21	1.99
126037--126094	16	3.4	17	77	20	59	1	10	8	79	1.01
126037--126096	14	3.5	17	76	21	63	1	10	10	78	1.04
126052--126092	14	2.8	14	92	7	64	2	9	7	80	0.99
130756--130793	19	1.9	19	89	5	58	2	10	7	78	1.04
130771--130811	14	2.8	14	92	7	64	2	9	7	80	0.99
130755--130795	21	2.0	21	90	0	64	2	9	7	80	0.99
133999--134039	8	4.9	8	93	6	64	85	9	4	0	0.73
133997--134060	24	2.6	24	80	2	65	78	14	7	0	0.96
133997--134042	17	2.7	16	83	12	56	84	10	4	0	0.75
139764--139806	22	1.9	23	85	4	61	27	4	13	53	1.60
146010--146069	30	2.0	31	86	3	86	28	8	10	53	1.63
146941--146992	21	2.6	21	90	6	81	34	13	5	46	1.67
147405--147444	19	2.0	20	90	4	64	20	15	0	65	1.28
147401--147447	19	2.6	18	83	12	60	19	14	0	65	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148391--148442	21	2.6	20	87	6	70	38	13	5	42	1.68
151915--151957	23	1.9	21	81	13	50	34	13	18	32	1.90
157461--157564	36	2.9	36	94	1	174	31	3	34	29	1.76
162700--162728	15	2.0	15	93	6	51	0	20	0	79	0.74
162750--162797	25	2.0	24	84	12	62	0	16	4	79	0.89
163194--163279	13	7.2	12	72	22	58	29	3	37	30	1.74
163176--163280	36	2.9	36	95	1	185	28	4	36	30	1.78
170556--170595	21	1.9	21	90	10	64	30	5	7	57	1.48
181054--181212	38	4.2	38	86	2	203	24	20	27	28	1.99
181052--181212	76	2.1	77	87	2	234	24	19	26	28	1.99
186577--186617	9	4.7	9	84	6	57	19	2	0	78	0.87
186576--186617	17	2.4	17	88	4	57	19	2	0	78	0.86
189273--189323	19	2.6	20	87	3	68	45	5	15	33	1.71
190699--190814	55	2.1	55	84	4	146	33	8	20	37	1.83
190699--190836	55	2.5	55	78	11	133	34	9	19	36	1.84
197487--197515	12	2.4	12	100	0	58	62	0	31	6	1.22
207421--207555	45	3.1	45	90	6	201	29	22	8	39	1.83
214130--214479	93	3.8	92	78	6	348	34	10	17	38	1.83
214655--215149	93	5.3	93	82	2	525	34	10	17	37	1.84
216312--216373	30	2.0	33	90	9	103	51	6	4	37	1.49
216388--216444	29	2.0	29	85	0	78	54	12	1	31	1.48
219497--219758	45	5.8	45	85	3	339	25	21	7	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219533--219758	89	2.5	89	91	2	353	25	21	7	46	1.76
219779--219983	68	3.0	68	89	0	302	29	26	14	29	1.95
220163--220863	55	12.8	55	85	1	897	29	18	17	33	1.95
221329--221385	22	2.8	20	76	10	60	26	26	17	29	1.97
221271--221459	95	2.0	95	85	0	252	24	23	16	34	1.95
228082--228145	8	8.0	8	80	13	78	0	6	10	82	0.82
228071--228111	20	2.2	20	86	8	59	0	9	9	80	0.91
228071--228145	33	2.2	34	86	6	100	0	8	12	80	0.92
228081--228143	15	3.9	16	84	12	85	0	7	9	82	0.84
231068--231295	90	2.5	90	93	2	377	24	21	7	46	1.77
231068--231283	45	4.8	45	90	2	335	23	22	7	46	1.76
231316--231654	68	5.0	68	87	0	464	30	23	14	31	1.95
231807--232542	55	13.4	55	83	2	843	28	17	18	35	1.94
234298--234471	93	1.9	93	88	0	267	36	12	13	37	1.82
234568--234741	93	1.9	92	81	8	210	35	11	17	36	1.86
238396--238467	22	3.5	20	81	9	83	31	15	26	26	1.95
238876--239260	45	8.6	45	87	0	502	38	10	22	28	1.87
243450--243490	22	1.9	22	90	5	66	36	4	12	46	1.63
243833--243858	13	2.0	13	100	0	52	15	0	23	61	1.33
248882--248924	22	2.0	22	100	0	86	44	4	23	27	1.73
251226--251266	22	1.9	22	90	5	66	36	4	12	46	1.63
251426--251540	60	1.9	60	92	0	194	28	17	26	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255954--256004	20	2.5	20	90	6	77	39	15	23	21	1.92
256026--256138	22	5.6	19	77	11	109	30	12	27	29	1.93
256027--256138	19	5.5	22	77	11	105	31	12	26	29	1.93
256027--256138	41	2.7	41	92	1	179	31	12	26	29	1.93
256530--256890	45	8.0	45	81	3	386	40	11	21	26	1.87
258827--258890	21	3.1	21	81	2	76	29	28	17	25	1.97
260202--260980	60	13.0	60	83	1	918	30	21	12	35	1.91
260202--260980	239	3.3	238	85	1	941	30	21	12	35	1.91
261376--261430	22	2.6	22	83	11	62	23	27	16	32	1.96
267582--268668	60	18.1	60	85	1	1372	29	21	11	36	1.90

Tables:   1   2   3   4   5