genome.fa.s7992.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007992.1 Hibiscus syriacus cultivar Beakdansim tig00110442_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1314873

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 534 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267582--268668	361	3.0	359	88	2	1529	29	21	11	36	1.90
280698--280758	13	4.7	13	93	0	104	27	21	18	32	1.96
286544--286800	138	1.9	138	86	4	376	29	13	16	40	1.87
286748--286851	53	2.0	53	88	0	154	28	20	15	35	1.93
288858--288888	2	15.5	2	100	0	62	51	0	0	48	1.00
294810--294869	11	5.5	11	82	7	68	0	6	8	85	0.76
294803--294869	22	3.1	21	80	17	75	0	7	10	82	0.85
294803--294849	11	4.3	11	88	0	67	0	10	10	78	0.96
306906--306936	10	3.1	10	90	0	53	22	9	29	38	1.86
323431--323480	23	2.2	23	85	0	64	44	10	4	42	1.56
334134--334385	136	1.8	137	82	4	321	28	13	15	41	1.86
342449--342486	18	2.1	18	90	0	58	42	39	5	13	1.66
342792--342823	9	3.4	9	91	8	55	81	9	0	9	0.88
342792--342834	19	2.3	19	88	8	61	83	9	0	6	0.80
342792--342828	10	3.7	10	92	7	58	81	10	0	8	0.89
348467--348509	21	2.0	21	82	8	52	37	20	11	30	1.89
349027--349075	21	2.3	22	85	3	64	26	12	2	59	1.44
359533--359665	48	2.8	48	92	0	221	24	23	16	36	1.94
359623--359760	44	3.2	43	85	3	188	24	24	10	40	1.86
364028--364148	42	2.9	41	80	3	109	25	19	23	30	1.98
363695--364224	263	2.0	264	87	0	765	28	19	21	30	1.98
372818--372942	48	2.6	47	90	5	189	35	17	22	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379904--379962	21	2.8	21	86	0	73	45	23	6	23	1.76
387583--387612	11	2.8	11	95	5	53	76	0	6	16	0.99
387550--387618	32	2.2	32	86	0	93	71	4	8	15	1.28
392163--392295	48	2.8	48	88	0	203	24	24	15	34	1.95
392260--392390	44	3.0	44	85	3	185	24	23	9	41	1.85
395250--395371	40	3.0	40	98	0	235	22	14	27	36	1.93
395487--395600	47	2.5	45	84	6	149	38	7	24	28	1.83
402242--402363	40	3.0	40	93	0	208	23	18	25	32	1.97
402468--402592	47	2.8	44	83	7	144	40	8	21	29	1.82
411032--411090	21	2.8	21	86	0	73	45	23	6	23	1.76
413228--413261	4	8.2	4	90	3	50	47	0	29	23	1.52
415737--415956	48	4.8	48	79	9	203	24	22	14	39	1.91
415827--415964	44	3.2	44	83	3	172	23	22	10	43	1.84
418824--418945	40	3.0	40	97	0	226	22	16	27	33	1.95
419050--419175	47	2.8	45	84	5	155	40	7	22	29	1.82
425768--425849	40	2.0	40	93	4	139	25	17	24	32	1.96
425979--426079	47	2.2	45	87	3	139	39	6	23	29	1.81
435403--435432	13	2.3	13	94	0	51	63	6	3	26	1.35
435815--436027	44	4.7	44	87	3	216	25	21	15	38	1.92
435841--436027	44	4.2	43	85	4	221	24	21	14	39	1.91
435841--436027	88	2.1	90	87	6	265	24	21	14	39	1.91
451192--451216	13	1.9	13	100	0	50	32	20	8	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454670--454843	55	3.2	55	91	0	285	32	12	18	36	1.88
454821--454862	20	2.1	20	100	0	84	33	9	23	33	1.87
454766--454909	75	1.9	75	88	2	218	34	10	19	36	1.86
454841--455031	55	3.5	56	81	7	194	32	13	18	35	1.89
454711--454973	130	2.0	130	87	4	379	32	12	19	36	1.88
454670--455028	185	1.9	185	86	1	513	33	12	18	35	1.88
464170--464326	43	3.7	43	76	9	126	15	22	26	35	1.95
464214--464326	43	2.7	43	76	16	130	15	22	26	35	1.94
465658--465896	55	4.3	55	87	3	304	34	11	18	35	1.88
465685--465918	55	4.3	55	88	1	335	33	11	19	35	1.89
468265--468302	19	2.0	19	94	0	67	28	21	28	21	1.98
468328--468416	45	2.0	46	93	2	153	24	19	28	28	1.98
468404--468471	33	1.9	33	82	11	82	41	10	14	33	1.80
478951--478993	23	1.9	22	90	4	68	11	11	6	69	1.35
479318--479342	10	2.5	10	100	0	50	92	8	0	0	0.40
485859--485901	23	1.9	22	90	4	68	13	11	4	69	1.33
486347--486416	21	3.3	21	81	0	77	21	18	18	41	1.91
493634--493810	54	3.3	54	90	0	282	32	15	16	35	1.91
493763--493895	70	1.9	70	87	3	196	35	15	14	34	1.88
493833--493982	54	2.8	54	87	4	225	32	13	17	36	1.88
493700--493949	124	2.0	124	96	0	455	34	16	15	34	1.90
493655--494085	178	2.4	176	81	3	476	32	16	16	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493965--493996	15	2.1	15	94	0	55	18	15	28	37	1.92
493912--494048	67	2.0	67	87	4	195	28	18	19	33	1.95
493859--494101	120	2.0	122	82	4	294	30	16	18	34	1.93
493981--494101	53	2.3	54	88	1	172	29	19	19	32	1.96
494803--494836	17	2.0	17	100	0	68	41	5	11	41	1.66
496055--496147	46	2.0	46	95	0	168	24	23	10	40	1.86
496643--496688	21	2.2	21	100	0	92	30	4	32	32	1.77
498920--498944	12	2.1	12	100	0	50	28	16	32	24	1.96
501675--501699	12	2.1	12	100	0	50	32	52	8	8	1.60
503271--503305	12	2.8	13	86	8	54	45	8	5	40	1.58
508641--509151	54	9.5	54	84	0	576	33	14	18	34	1.91
511415--511549	45	3.0	45	94	1	225	31	22	7	39	1.81
513764--513816	26	2.0	26	85	7	72	62	7	1	28	1.33
513783--513863	43	1.9	42	82	12	103	64	1	4	29	1.22
516202--516236	18	1.9	18	88	11	54	65	0	5	28	1.15
518130--518299	90	1.9	88	91	2	277	43	6	11	38	1.66
518760--518785	8	3.2	8	100	0	52	34	0	11	53	1.37
523432--523535	31	3.3	30	77	7	91	28	17	13	40	1.87
536955--536980	8	3.2	8	100	0	52	34	0	11	53	1.37
539670--539708	3	13.0	3	100	0	78	66	0	0	33	0.92
541668--541771	31	3.3	30	77	7	91	28	17	13	40	1.87
554374--554519	59	2.5	59	87	0	193	30	15	26	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554560--554749	38	5.1	37	72	9	143	35	14	16	33	1.89
556798--556847	23	2.2	23	82	7	57	58	16	2	24	1.49
557461--557508	18	2.7	18	96	0	87	33	35	0	31	1.58
559472--559574	37	2.8	37	84	0	125	43	13	14	28	1.83
559934--559976	18	2.5	17	85	7	61	25	4	2	67	1.22
560223--560284	10	6.1	10	77	18	58	27	3	0	69	1.04
564601--565005	192	2.1	191	92	0	675	29	19	19	31	1.96
566073--566235	73	2.2	76	86	9	221	26	18	11	42	1.84
566265--566413	39	3.6	39	68	22	115	28	22	14	34	1.93
566320--566621	104	3.0	101	84	9	404	30	21	11	36	1.89
566533--566608	36	2.1	36	87	0	107	23	21	15	39	1.92
566808--567433	105	6.0	105	90	2	867	33	26	18	22	1.96
567976--568080	37	2.8	37	85	0	138	41	14	14	29	1.85
568441--568479	18	2.2	18	95	4	71	23	5	2	69	1.21
568503--568572	23	3.1	23	72	15	65	28	5	0	65	1.15
568733--568783	16	3.1	16	78	13	59	23	3	0	72	1.01
568972--568999	2	14.0	2	100	0	56	50	0	0	50	1.00
570119--570219	27	3.8	26	80	12	107	61	1	18	17	1.44
570330--570379	24	2.1	24	96	0	91	62	4	26	8	1.41
579134--579164	16	1.9	16	93	0	53	38	0	12	48	1.42
587601--587648	2	24.5	2	95	4	89	47	0	0	52	1.00
587901--588793	81	11.1	81	86	3	1140	32	21	10	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587870--588793	242	3.8	243	86	1	1216	33	21	10	35	1.87
588872--589060	55	3.4	55	91	0	297	32	19	8	39	1.82
593561--594210	81	8.1	81	87	1	887	31	21	10	36	1.87
594292--594494	55	3.7	55	88	1	284	34	18	9	37	1.83
594832--594923	42	2.2	41	86	1	121	26	25	13	35	1.92
597563--597596	17	2.0	17	88	0	50	38	0	23	38	1.55
600560--600597	20	1.9	20	89	10	60	42	7	10	39	1.69
603168--603300	11	12.6	11	76	12	75	3	21	0	75	0.94
603165--603294	20	6.1	21	76	19	87	3	22	0	74	0.95
603152--603203	27	2.0	26	88	3	77	1	19	1	76	0.97

Tables:   1   2   3   4   5