genome.fa.s7992.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007992.1 Hibiscus syriacus cultivar Beakdansim tig00110442_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1314873

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 534 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
603162--603192	16	1.9	16	93	0	53	3	16	0	80	0.83
603229--603302	6	11.8	6	70	18	53	4	20	0	75	0.96
603151--603301	10	15.8	9	72	16	74	2	21	0	75	0.97
603672--603706	18	1.9	18	88	11	54	77	5	0	17	0.96
603970--603998	15	1.9	15	100	0	58	10	6	0	82	0.83
614274--614340	26	2.4	28	79	18	70	5	13	4	76	1.13
617121--617159	20	1.9	21	84	5	53	33	0	38	28	1.57
617495--617545	19	2.6	20	90	3	77	45	3	13	37	1.63
618501--618539	20	2.0	19	85	5	51	41	10	17	30	1.83
620721--620790	29	2.6	26	77	18	79	2	18	2	75	1.05
621493--621535	20	2.2	20	91	4	70	44	4	13	37	1.65
621493--621543	19	2.6	20	87	3	59	43	7	15	33	1.76
622530--622568	20	2.0	19	85	5	51	41	10	17	30	1.83
622988--623153	46	3.6	46	89	1	226	22	24	12	40	1.89
623049--623133	26	3.5	26	76	18	110	20	23	12	43	1.86
623074--623259	20	8.7	20	80	13	192	19	29	12	38	1.88
623030--623259	66	3.5	60	73	16	181	20	27	11	39	1.88
623120--623288	86	2.0	86	91	2	277	20	28	11	39	1.88
623140--623318	46	4.0	46	77	8	190	20	27	13	39	1.90
626364--626445	40	2.0	40	92	0	137	25	15	24	34	1.95
638578--638638	27	2.3	25	72	10	59	59	0	21	19	1.39
639675--639773	50	2.0	51	85	2	137	20	20	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642185--642223	14	2.8	14	84	0	51	23	38	23	15	1.92
643323--643364	20	2.1	20	90	0	66	28	9	30	30	1.89
643554--643592	2	19.5	2	100	0	78	51	0	0	48	1.00
646192--647018	55	15.1	55	89	1	1140	25	18	19	35	1.95
647455--647506	20	2.6	21	84	9	72	21	32	17	28	1.96
648933--649022	24	3.8	24	76	5	83	51	14	12	22	1.75
654493--654526	7	4.6	7	89	10	50	82	11	5	0	0.83
656567--656735	89	1.9	88	93	3	295	44	6	10	37	1.65
657757--657801	23	1.9	24	82	13	58	22	8	0	68	1.16
657768--657811	18	2.4	18	92	0	70	18	9	0	72	1.10
659742--659785	2	22.0	2	100	0	88	50	0	0	50	1.00
664582--665323	81	9.1	81	87	3	988	31	21	11	36	1.88
665151--665323	88	2.0	88	90	0	274	31	18	12	37	1.88
670585--671310	81	9.0	81	90	0	1074	30	22	12	34	1.91
679405--679451	19	2.5	19	92	0	76	4	19	4	72	1.18
686572--686639	3	22.7	3	100	0	136	33	0	0	66	0.92
688570--688599	14	2.1	14	93	0	51	26	10	6	56	1.57
692002--692915	241	3.8	241	78	4	788	28	15	19	36	1.93
694895--694961	22	3.0	22	100	0	134	26	26	26	19	1.99
695181--695240	30	2.0	31	86	3	86	35	21	6	36	1.80
695603--695752	66	2.2	67	85	4	196	18	28	25	28	1.98
695732--695774	21	2.0	21	86	0	59	16	25	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701806--701872	22	3.0	22	100	0	134	26	26	26	19	1.99
702092--702151	30	2.0	31	86	3	86	35	21	6	36	1.80
702513--702665	68	2.3	67	88	2	216	16	27	27	28	1.97
702645--702687	21	2.0	21	86	0	59	16	25	27	30	1.97
707550--707934	36	10.5	36	78	10	304	44	5	6	43	1.53
707719--707743	11	2.3	11	100	0	50	40	8	8	44	1.63
707545--707917	73	5.0	73	79	11	384	43	5	6	44	1.53
707937--707990	7	7.3	7	82	12	54	25	3	0	70	1.04
707932--707963	16	2.0	16	93	0	55	28	0	3	68	1.04
709880--709905	3	8.7	3	100	0	52	34	0	0	65	0.93
728046--728079	11	3.2	10	91	8	50	79	0	11	8	0.94
728054--728152	27	3.6	26	77	12	85	77	1	11	10	1.04
728054--728152	28	3.6	25	76	16	74	77	1	11	10	1.04
728090--728134	15	2.9	15	81	12	56	75	2	15	6	1.11
728055--728137	43	1.9	43	83	11	107	77	1	12	9	1.06
728065--728151	17	5.3	15	73	21	59	78	1	10	10	1.03
738572--738749	18	9.9	18	85	0	239	28	30	20	20	1.98
750217--750480	136	1.9	137	84	3	354	29	12	17	40	1.87
755797--755849	26	2.0	26	85	0	70	30	16	22	30	1.96
756862--756965	47	2.2	48	83	8	124	17	18	16	48	1.82
756899--756967	12	5.8	12	78	8	70	14	15	17	52	1.75
756862--756969	24	4.5	24	78	9	114	17	17	16	48	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
760569--760621	26	2.0	26	85	0	70	30	16	22	30	1.96
761617--761720	47	2.2	48	82	5	122	18	16	15	50	1.79
761654--761724	24	3.0	24	77	10	83	16	14	15	53	1.73
764577--764860	55	5.1	55	87	3	365	36	17	12	33	1.87
764571--764857	110	2.6	110	88	2	407	36	17	12	33	1.87
766495--766559	24	2.8	24	85	2	87	41	21	16	20	1.90
767605--767629	2	12.5	2	100	0	50	52	0	0	48	1.00
769094--770501	80	17.3	80	85	3	1662	23	19	23	33	1.97
770084--770315	76	3.0	75	78	8	214	21	17	23	37	1.93
771283--771535	95	2.7	95	85	3	321	31	16	17	33	1.93
773780--773844	14	4.6	14	80	3	76	73	0	10	15	1.08
773780--773826	19	2.5	18	77	16	51	74	0	8	17	1.05
773780--773844	29	2.3	29	81	2	78	73	0	10	15	1.08
774265--774293	2	14.5	2	100	0	58	51	0	0	48	1.00
774338--774496	11	13.5	11	66	26	53	72	3	5	18	1.19
774346--774395	20	2.5	20	93	3	84	74	6	4	16	1.17
774406--774500	6	15.2	6	69	22	54	73	3	4	18	1.13
774412--774512	29	4.0	23	75	20	78	73	2	5	17	1.16
775489--775537	14	3.2	16	75	16	50	57	0	8	34	1.29
776369--776476	36	3.0	36	79	5	128	17	26	19	36	1.94
782039--782173	59	2.3	59	92	1	216	28	29	20	20	1.98
784063--784279	104	2.1	104	89	0	326	25	11	11	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784493--785018	41	12.8	41	74	10	322	27	17	18	36	1.93
784630--785018	81	4.8	81	75	8	324	26	16	18	38	1.92
788013--788252	42	5.6	42	80	3	248	25	22	19	32	1.97
788011--788252	85	2.8	85	80	4	256	25	22	19	32	1.97
788705--788774	37	1.9	36	88	2	104	47	4	0	48	1.21
790542--790578	2	19.0	2	94	5	67	51	0	48	0	1.00
791129--791172	22	2.0	22	86	0	61	61	0	4	34	1.16
798827--798945	59	2.1	56	85	4	157	27	17	24	30	1.97
804179--804213	18	1.9	18	94	0	61	17	48	17	17	1.81
804856--804924	36	1.9	36	100	0	138	42	8	21	27	1.82
806701--806807	48	2.2	48	85	3	135	21	12	17	48	1.79
806713--806805	24	3.9	24	78	0	69	21	11	18	48	1.80
806713--806795	12	6.9	12	69	10	53	21	13	18	46	1.82
808759--808865	31	3.7	29	69	22	82	24	27	28	20	1.99
808774--808822	23	2.1	23	96	0	89	24	26	26	22	2.00
808797--808869	31	2.4	31	85	0	92	27	30	26	16	1.97
809537--809576	17	2.5	16	84	8	55	35	12	5	47	1.63
809577--809628	22	2.4	22	80	0	59	36	21	21	21	1.95
809630--809689	20	3.0	20	97	0	111	15	20	33	31	1.93
823647--823677	16	1.9	16	93	0	53	61	12	9	16	1.56
824791--824821	13	2.4	13	94	0	53	64	0	0	35	0.94
824927--824990	17	3.5	17	69	19	56	15	23	10	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
824925--825026	39	2.6	39	96	1	188	17	20	13	48	1.81
824944--825012	22	3.4	22	67	19	67	13	20	15	50	1.77
825180--825469	105	2.8	105	92	0	490	26	16	15	41	1.89
825405--825461	16	3.4	16	69	21	53	19	24	8	47	1.77
826463--826507	8	6.0	8	76	23	53	11	13	0	75	1.05
826454--826497	20	2.2	20	91	0	70	11	18	0	70	1.16
826479--826507	9	3.3	9	95	4	51	10	10	0	79	0.94
826487--826540	25	2.2	25	83	6	65	7	14	1	75	1.09
829999--830057	22	2.7	22	86	0	91	23	28	23	23	1.99
832327--832372	24	1.9	24	90	0	74	15	15	17	52	1.76

Tables:   1   2   3   4   5