Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007992.1 Hibiscus syriacus cultivar Beakdansim tig00110442_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1314873

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 534 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1158657--1158709
16
3.3
16
81
0
61
24
3
13
58
1.51
1158893--1159070
96
1.9
96
85
2
250
28
30
14
27
1.95
1166482--1166511
11
2.7
11
100
0
60
63
10
0
26
1.26
1180353--1180388
15
2.4
15
95
0
63
16
27
16
38
1.90
1180885--1180952
33
2.1
33
100
0
136
41
14
20
23
1.89
1203484--1203554
29
2.4
29
97
0
133
40
15
7
36
1.74
1206439--1206587
77
1.9
79
84
5
205
42
8
4
44
1.54
1208683--1208761
35
2.3
35
93
0
131
36
5
12
45
1.64
1208820--1208852
16
2.1
16
94
0
57
30
9
6
54
1.56
1217246--1217272
14
1.9
14
100
0
54
33
37
7
22
1.82
1217314--1217356
13
3.2
13
83
6
59
30
25
9
34
1.87
1220781--1220807
14
1.9
14
100
0
54
25
29
22
22
1.99
1221790--1221845
27
2.2
26
90
6
87
46
19
10
23
1.81
1227978--1228030
20
2.6
19
77
16
54
47
5
0
47
1.26
1230841--1230933
29
3.1
30
72
17
95
43
3
22
31
1.69
1239021--1239076
23
2.4
23
96
0
103
35
21
12
30
1.90
1242581--1242624
5
8.8
5
97
0
70
13
40
40
4
1.65
1242923--1242977
22
2.5
22
75
0
56
30
9
20
40
1.83
1248519--1248565
15
3.1
15
84
0
58
10
38
31
19
1.86
1248524--1248564
5
8.2
5
86
0
55
4
39
34
21
1.75
1248856--1248910
22
2.5
22
75
0
56
29
9
23
38
1.85
1254456--1254495
5
8.0
5
88
0
53
7
37
40
15
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1254792--1254846
22
2.5
22
78
0
65
30
9
21
38
1.85
1258271--1258313
22
2.0
22
85
0
59
65
0
4
30
1.13
1259531--1259610
20
3.9
19
78
15
79
20
3
1
75
1.03
1259544--1259612
31
2.4
28
72
18
59
20
4
1
73
1.07
1259533--1259612
17
4.9
17
75
17
80
20
3
1
75
1.03
1259691--1259774
2
45.0
2
78
13
72
44
1
0
54
1.07
1260154--1260231
21
4.0
20
77
11
72
17
2
5
74
1.12
1260202--1260257
29
1.9
29
85
0
76
12
7
5
75
1.18
1262840--1263080
95
2.5
95
85
4
297
34
15
17
32
1.92
1264221--1265274
84
12.7
83
86
3
1230
34
22
18
24
1.96
1264221--1265274
164
6.3
166
83
3
1212
34
22
18
24
1.96
1265047--1265357
86
3.7
83
84
4
225
36
21
17
24
1.95
1267076--1267190
3
39.3
3
77
13
82
27
1
2
67
1.13
1267049--1267192
9
15.8
9
74
12
80
25
3
2
68
1.16
1267266--1267300
2
17.5
2
100
0
70
48
0
0
51
1.00
1267565--1267611
14
3.4
14
79
5
60
8
6
6
78
1.08
1268113--1268178
10
6.8
10
71
23
52
51
3
1
43
1.26
1268119--1268175
26
2.2
25
87
6
87
49
3
1
45
1.29
1268062--1268178
16
7.1
16
76
11
87
52
5
1
41
1.34
1271205--1271249
19
2.4
19
88
7
65
73
0
15
11
1.10
1271402--1271488
41
2.2
38
89
6
129
64
11
0
24
1.26
1284371--1284425
7
8.3
7
83
4
53
85
1
7
5
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1284371--1284429
19
3.1
19
80
7
75
84
1
6
6
0.83
1293421--1293478
30
1.9
30
89
0
89
43
1
18
36
1.61
1302419--1303111
103
6.9
103
84
7
825
40
10
17
31
1.84
1302419--1303111
205
3.4
204
84
7
905
40
10
17
31
1.84
1302703--1303080
194
2.0
191
88
2
560
39
11
16
33
1.84
1306456--1306591
64
2.1
64
98
0
263
27
23
18
30
1.98
1306616--1306656
21
1.9
22
90
5
66
36
19
21
21
1.95
1309034--1309063
10
2.9
10
95
5
51
80
10
10
0
0.92
1309034--1309072
11
3.6
11
89
6
53
79
12
7
0
0.93
1314358--1314407
25
2.0
25
92
3
84
22
18
22
38
1.94

Tables:   1   2   3   4   5

The End!