genome.fa.s7995.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007995.1 Hibiscus syriacus cultivar Beakdansim tig00110445_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  866869

Tables:   1   2   3   4   

This is table  3  of  4  ( 462 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488103--488196	46	2.1	45	85	2	125	37	9	26	26	1.87
493365--493399	3	11.7	3	100	0	70	68	0	0	31	0.90
497440--497554	60	1.9	60	83	3	151	20	32	28	18	1.96
501044--501745	127	5.8	117	82	7	539	22	22	21	33	1.97
501277--501751	127	3.7	127	90	1	731	21	21	22	34	1.97
501054--501751	253	2.9	242	83	7	796	22	22	21	34	1.97
501880--502007	63	2.0	63	93	3	222	39	1	22	35	1.64
502025--502163	57	2.5	55	87	10	192	34	10	23	31	1.88
502252--502327	34	2.5	28	74	23	82	38	5	3	52	1.43
504495--504543	23	2.0	26	88	11	77	63	2	2	32	1.17
505138--505208	30	2.5	27	84	6	79	57	0	0	42	0.98
507587--507645	23	2.5	23	75	2	64	40	3	0	55	1.16
521246--521270	13	1.9	13	100	0	50	52	0	8	40	1.31
522602--522629	13	2.2	13	100	0	56	60	0	0	39	0.97
524585--524621	16	2.3	16	95	0	65	29	29	5	35	1.80
527309--527351	16	2.6	16	81	3	50	23	4	2	69	1.18
527314--527348	4	8.8	4	87	0	52	22	2	2	71	1.13
527612--528478	432	2.0	432	98	0	1691	30	14	13	41	1.84
529823--529858	6	6.0	6	90	0	54	30	2	36	30	1.72
530367--530424	24	2.5	23	81	15	66	15	10	3	70	1.28
536614--536664	21	2.4	21	83	6	68	35	29	13	21	1.92
537385--537456	20	4.0	17	79	20	76	20	23	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537385--537457	35	2.1	36	87	7	105	20	23	19	36	1.95
543686--543729	21	2.1	21	95	0	79	27	27	20	25	1.99
559885--560568	232	2.9	229	87	3	965	32	16	16	34	1.92
560714--560767	21	2.7	20	85	5	72	70	11	3	14	1.29
560720--560769	21	2.4	21	86	0	73	70	12	4	14	1.31
560769--560813	21	2.1	23	88	12	69	33	4	2	60	1.29
561671--562379	134	5.3	134	82	2	807	31	22	15	30	1.95
561671--562379	267	2.6	266	82	4	845	31	22	15	30	1.95
562561--562592	16	2.0	16	93	0	55	40	0	0	59	0.97
563933--564004	29	2.5	29	80	12	85	26	9	6	56	1.56
564592--564957	131	2.8	131	83	3	443	32	10	17	39	1.83
571696--571741	22	2.1	21	84	11	58	50	0	2	47	1.13
573743--573773	5	6.2	5	100	0	62	41	0	0	58	0.98
573710--573758	22	2.2	23	85	7	66	53	0	2	44	1.12
573874--573918	23	2.0	23	86	0	63	42	4	0	53	1.21
573932--573976	23	2.0	23	86	8	65	48	0	0	51	1.00
573944--573984	15	2.8	15	78	17	50	48	0	0	51	1.00
579586--579661	2	38.0	2	100	0	152	50	0	0	50	1.00
585016--585059	23	1.9	23	90	0	70	47	9	25	18	1.77
586146--586260	60	1.9	59	82	1	140	34	21	4	39	1.73
587556--587591	17	2.1	17	100	0	72	38	0	11	50	1.38
588568--588599	10	3.3	10	95	4	57	18	6	18	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589109--589297	60	3.2	60	77	7	188	38	4	24	32	1.76
589504--589583	2	40.0	2	100	0	160	50	0	0	50	1.00
598205--598286	23	3.9	22	76	16	75	26	30	23	19	1.98
598205--598267	23	2.8	23	86	9	78	26	30	22	20	1.98
600460--600485	2	13.0	2	100	0	52	50	0	0	50	1.00
600604--600644	20	2.0	20	100	0	82	34	9	26	29	1.88
600867--600910	23	2.0	23	81	4	54	50	11	2	36	1.51
602577--602610	2	17.0	2	100	0	68	50	0	0	50	1.00
602621--602668	22	2.2	22	96	0	87	37	14	10	37	1.81
603335--603495	82	2.0	82	93	2	279	42	15	21	21	1.89
603869--603907	21	1.9	20	84	5	51	43	0	0	56	0.99
605172--605209	18	2.1	18	85	9	51	44	0	2	52	1.14
605246--605299	26	2.0	27	82	10	67	44	0	5	50	1.25
609284--609322	21	2.0	20	85	14	55	48	0	0	51	1.00
609284--609329	22	2.1	21	84	11	58	52	0	0	47	1.00
609666--609710	21	2.1	21	95	0	81	26	31	20	22	1.98
609733--610326	21	28.9	20	91	4	708	21	23	21	33	1.97
609733--610323	42	13.9	42	90	4	902	21	23	21	33	1.98
609733--610326	63	9.6	63	89	5	912	21	23	21	33	1.97
610110--610172	31	2.0	31	96	0	117	23	22	20	33	1.97
610892--610923	16	1.9	17	93	6	57	28	9	0	62	1.26
614398--614468	24	3.0	24	82	0	97	15	12	18	53	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614402--614466	12	5.4	12	76	7	69	12	13	18	55	1.69
615926--615980	21	2.6	21	100	0	110	27	27	27	18	1.98
619953--620006	19	2.5	22	88	11	78	22	31	20	25	1.98
624684--624750	22	3.0	22	91	2	107	25	26	26	20	1.99
626440--626484	21	2.1	21	87	0	63	15	24	28	31	1.96
629560--629626	22	3.0	22	95	2	116	25	28	26	19	1.99
631325--631369	21	2.1	21	87	0	63	15	24	28	31	1.96
633129--633196	23	2.9	24	74	14	70	42	2	1	52	1.25
633372--633416	23	2.0	23	81	0	54	40	4	2	53	1.33
633423--633466	23	2.0	23	86	4	63	47	0	2	50	1.13
633452--633480	13	2.1	14	93	6	51	44	0	0	55	0.99
633453--633482	16	1.9	15	93	6	51	46	0	0	53	1.00
635161--635424	84	3.1	84	84	7	268	27	17	5	49	1.68
635210--635480	42	6.5	42	82	7	302	26	18	5	49	1.69
635216--635480	84	3.2	85	88	6	364	27	18	5	48	1.70
635204--635507	126	2.4	125	81	10	368	27	18	4	49	1.68
637584--637620	18	2.0	20	84	10	51	48	2	2	45	1.30
644291--644336	12	3.6	12	81	16	56	45	17	19	17	1.85
644297--644337	12	3.1	13	80	19	57	46	14	17	21	1.84
646628--646667	21	1.9	21	94	0	71	30	15	7	47	1.72
646662--646760	33	3.0	33	94	1	164	32	7	15	45	1.73
646746--646800	13	4.2	13	75	13	58	34	3	12	49	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647197--647253	15	3.6	15	80	13	69	31	12	12	43	1.79
647216--647250	18	1.9	18	100	0	70	37	11	11	40	1.77
647344--647375	16	2.0	17	88	11	50	43	21	21	12	1.86
648941--649092	60	2.5	60	78	14	143	36	21	3	38	1.72
649211--649380	60	2.8	59	83	0	214	40	5	23	31	1.77
649675--649706	2	16.0	2	100	0	64	50	0	0	50	1.00
650196--650287	30	3.1	29	77	9	89	44	6	15	33	1.72
651036--651062	11	2.5	11	100	0	54	18	29	18	33	1.95
659692--659782	45	2.0	46	91	2	148	28	26	18	26	1.98
661116--661183	31	2.3	30	85	10	86	36	5	22	35	1.78
662297--662364	33	2.0	34	94	2	120	47	8	17	26	1.77
662519--662657	38	3.7	38	80	3	172	29	16	25	28	1.97
665673--665754	13	6.4	12	75	21	69	78	0	18	3	0.90
665672--665765	12	8.4	11	75	19	72	78	0	17	4	0.90
665673--665763	21	4.2	21	81	17	98	78	0	17	4	0.92
665686--665785	52	1.9	52	82	9	125	78	1	14	7	1.01
665673--665788	33	3.6	33	83	12	127	77	0	14	6	1.02
667016--667090	30	2.5	30	75	12	73	42	8	16	33	1.77
670391--670447	23	2.5	23	80	5	62	26	10	17	45	1.81
670661--670745	38	2.2	38	85	4	109	38	15	21	24	1.92
671990--672140	64	2.4	64	89	4	225	29	20	19	31	1.97
677904--677972	21	3.2	21	76	13	68	30	21	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
677904--678000	44	2.2	44	87	3	133	27	23	21	26	1.99
677919--678006	23	3.9	23	77	8	92	26	26	22	25	2.00
679540--679594	27	2.0	27	82	6	67	14	47	10	27	1.78
679634--679663	15	2.0	15	100	0	60	40	6	20	33	1.78
680659--680779	64	1.9	65	91	5	201	31	21	18	28	1.97
685457--685603	60	2.5	60	77	6	154	32	20	15	31	1.94
686993--687175	60	3.1	59	79	9	194	33	19	6	39	1.78
692401--692471	30	2.4	30	92	0	115	42	11	18	28	1.84
694170--694466	22	13.6	22	84	2	393	43	0	10	46	1.38
694167--694466	44	6.9	44	89	1	451	43	0	10	45	1.38

Tables:   1   2   3   4