genome.fa.s7995.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007995.1 Hibiscus syriacus cultivar Beakdansim tig00110445_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  866869

Tables:   1   2   3   4   

This is table  2  of  4  ( 462 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279350--279486	40	3.4	40	75	16	140	28	29	23	18	1.98
279350--279486	58	2.3	58	86	5	184	28	29	23	18	1.98
280016--280152	64	2.1	64	82	2	159	25	17	22	34	1.96
282415--282461	17	2.8	17	80	0	58	14	25	27	31	1.95
283401--283448	2	24.5	2	87	12	73	47	2	0	50	1.12
285493--285549	2	28.5	2	100	0	114	50	0	0	49	1.00
286756--286794	14	2.7	15	84	8	53	30	30	15	23	1.95
300423--300470	3	16.0	3	95	0	87	33	0	2	64	1.05
309514--309740	115	2.0	115	90	0	355	31	15	22	30	1.95
311883--311999	55	2.1	54	90	4	182	40	17	20	22	1.92
312362--312416	22	2.5	22	84	0	74	36	12	12	38	1.82
313092--314065	76	12.8	76	96	0	1759	22	19	21	36	1.95
314240--314281	3	14.0	3	89	0	66	35	0	2	61	1.09
314286--314325	3	13.3	3	94	0	71	70	0	0	30	0.88
316462--316609	71	2.1	72	85	1	199	35	25	18	20	1.95
318272--318310	21	1.9	20	89	5	60	20	23	23	33	1.97
318273--318333	9	6.3	9	76	14	59	16	27	26	29	1.97
324941--325007	29	2.3	29	87	2	91	43	23	7	25	1.80
324960--325065	29	3.7	29	88	0	140	44	23	7	24	1.79
325066--325100	18	2.0	17	94	5	61	11	22	48	17	1.79
332190--332257	29	2.3	29	87	0	91	42	23	7	26	1.80
332236--332315	29	2.8	29	92	0	124	47	22	6	23	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332316--332384	17	4.0	17	92	1	111	13	24	46	15	1.82
335256--335291	14	2.5	15	95	4	65	19	52	19	8	1.70
337724--337944	29	7.8	29	79	7	175	36	4	14	44	1.66
337747--337915	56	3.0	57	80	12	168	35	5	13	45	1.66
337717--337944	85	2.7	84	79	8	221	36	4	14	43	1.67
338842--338918	31	2.5	31	78	6	84	14	25	31	28	1.95
345143--345384	29	8.4	28	78	6	162	35	4	15	45	1.65
345144--345391	58	4.3	58	79	8	238	35	4	14	45	1.64
345141--345384	86	2.8	86	82	6	269	35	4	15	44	1.67
347840--347892	20	2.7	20	85	5	72	75	7	1	15	1.11
348550--348608	31	1.9	31	82	0	73	38	3	5	52	1.40
354740--355280	272	2.0	273	94	0	940	33	12	9	45	1.73
358721--358777	16	4.2	14	83	16	68	73	0	26	0	0.83
358735--358773	4	9.5	4	88	5	60	76	0	23	0	0.78
359798--359839	15	2.8	15	75	10	50	52	0	0	47	1.00
363534--363627	32	3.1	29	72	20	75	28	9	1	60	1.35
363701--363734	11	3.0	11	91	4	50	29	2	0	67	1.05
365925--366010	43	2.0	44	88	2	129	32	11	20	34	1.89
366142--366179	16	2.5	15	84	12	51	15	15	7	60	1.57
366219--366261	20	2.2	20	82	0	50	18	11	6	62	1.50
366487--366570	42	2.0	42	83	0	105	48	11	20	19	1.79
370704--370875	75	2.3	75	86	0	254	31	14	22	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372129--372274	22	6.6	22	95	0	256	32	19	13	34	1.91
372746--373078	122	2.7	122	87	0	486	39	15	19	26	1.91
373007--373348	137	2.5	135	86	5	449	38	15	19	26	1.91
373569--373641	3	24.7	3	78	10	53	39	0	0	60	0.97
373610--373649	20	2.0	20	90	9	64	50	0	0	50	1.00
376020--376156	67	2.0	67	95	0	247	43	6	7	43	1.58
377211--377247	2	18.5	2	100	0	74	51	0	0	48	1.00
377401--377448	22	2.1	24	92	7	82	45	8	0	45	1.33
377401--377444	20	2.1	21	91	8	72	45	9	0	45	1.35
377795--377825	2	15.5	2	100	0	62	51	0	0	48	1.00
383438--383490	18	2.9	18	97	0	97	49	7	16	26	1.73
383629--383654	11	2.4	11	100	0	52	38	7	0	53	1.30
383605--383708	54	2.0	54	81	11	126	42	4	0	51	1.29
386994--387234	109	2.2	108	77	13	244	24	15	13	46	1.81
389029--389054	2	13.0	2	100	0	52	50	0	0	50	1.00
389156--389187	2	16.0	2	100	0	64	50	0	0	50	1.00
390710--390752	20	2.1	21	91	4	70	46	0	0	53	1.00
396325--396409	35	2.5	33	78	14	91	27	8	10	54	1.63
404359--404481	50	2.5	49	86	1	165	29	31	8	30	1.88
409422--409476	27	2.0	27	100	0	110	36	7	32	23	1.82
409424--409488	27	2.4	27	89	5	87	36	7	30	24	1.84
410529--410555	9	3.0	9	100	0	54	55	22	0	22	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413197--413321	50	2.5	50	85	2	162	29	29	9	31	1.89
415494--415536	13	3.2	13	90	3	59	37	2	11	48	1.52
418291--418406	61	1.9	61	85	1	162	35	11	18	35	1.86
427289--427332	17	2.6	17	92	0	70	29	29	2	38	1.69
429346--429414	33	2.1	33	84	10	88	43	2	4	49	1.37
429822--429852	16	1.9	16	93	0	53	29	16	32	22	1.95
433997--434055	29	2.2	26	76	21	68	25	11	8	54	1.65
434153--434215	23	3.0	20	71	15	63	26	4	15	52	1.63
437214--437261	15	3.1	16	82	11	55	64	2	0	33	1.05
437166--437398	116	2.1	112	95	4	423	56	3	1	38	1.26
437329--437377	15	3.1	16	82	8	55	65	2	0	32	1.04
440463--441032	188	3.0	188	87	3	831	28	24	11	35	1.90
442130--442166	2	18.5	2	100	0	74	48	0	0	51	1.00
444072--444128	21	2.7	23	78	10	59	26	24	14	35	1.93
461611--461659	23	2.1	23	88	0	71	36	16	14	32	1.89
461634--461801	74	2.3	75	88	1	248	38	13	15	33	1.86
461723--461906	98	1.9	98	85	1	253	39	13	12	34	1.82
461573--461974	172	2.3	173	88	1	583	39	13	13	33	1.85
461817--461974	75	2.1	75	86	2	219	39	14	12	32	1.84
463634--463701	3	22.7	3	91	5	111	32	0	1	66	1.01
464133--464180	21	2.3	21	78	7	53	56	22	16	4	1.58
465106--465163	27	2.1	27	84	12	75	41	3	0	55	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465749--465789	18	2.3	18	88	12	59	29	4	2	63	1.28
467865--467905	7	5.9	7	83	11	57	14	17	9	58	1.62
470448--470486	19	2.0	20	85	14	55	76	0	23	0	0.78
472645--473191	114	4.8	114	92	0	851	30	16	21	31	1.95
475415--475469	22	2.5	22	82	11	76	36	14	14	34	1.87
475940--476004	20	3.3	20	68	12	53	49	9	21	20	1.76
475908--476004	40	2.5	40	86	11	130	47	10	21	20	1.80
475948--476012	20	3.3	20	66	12	53	43	10	18	27	1.83
476071--476115	24	1.9	23	82	13	56	51	6	24	17	1.70
475946--476657	113	6.4	112	87	6	887	38	13	18	29	1.90
476184--476228	24	1.9	23	82	13	56	51	6	24	17	1.70
476297--476341	24	1.9	23	82	13	56	51	6	24	17	1.70
476655--476838	84	2.2	82	82	5	210	39	17	16	26	1.91
477004--477080	3	25.7	3	92	5	129	32	0	1	66	1.00
477493--477535	21	2.0	21	82	8	52	58	18	18	4	1.56
478450--478505	26	2.2	26	84	12	71	42	3	0	53	1.18
483926--483966	3	13.7	3	100	0	82	68	0	0	31	0.90
484278--484524	40	5.7	42	68	13	133	22	18	31	27	1.97
484193--484531	135	2.5	135	92	0	554	24	17	30	27	1.97
484632--484698	31	2.2	30	84	10	82	40	13	13	32	1.83
484659--484887	66	3.4	66	78	10	211	41	11	15	31	1.82
484783--485005	120	1.9	121	81	10	278	42	12	13	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
484904--485060	66	2.4	65	90	6	237	41	11	14	32	1.82
485054--485137	28	2.7	30	80	14	91	45	11	11	30	1.77
485079--485151	28	2.6	28	85	6	103	43	13	12	30	1.81
485317--485618	105	2.9	105	87	1	428	40	10	16	32	1.82
485592--485837	34	7.0	35	84	6	286	34	11	21	32	1.89
485592--485828	35	6.8	35	85	9	272	33	11	20	33	1.89
486139--486213	4	19.2	4	84	10	102	26	0	22	50	1.49
487408--487484	16	4.8	16	75	13	68	1	12	6	79	0.99
487403--487477	10	7.8	10	78	19	54	1	13	6	78	1.00
487433--487496	12	5.7	12	78	7	55	1	17	7	73	1.14

Tables:   1   2   3   4