genome.fa.s8011.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008011.1 Hibiscus syriacus cultivar Beakdansim tig00110474_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1648842

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 811 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278429--278467	13	2.9	14	85	14	55	33	0	0	66	0.92
281704--281761	20	2.9	20	89	0	80	34	22	8	34	1.85
281727--281778	20	2.7	20	87	3	70	34	17	9	38	1.82
286930--286988	25	2.3	25	79	2	64	37	13	10	38	1.79
287037--287096	31	2.0	31	90	3	95	40	5	25	30	1.77
287340--287423	23	3.6	23	74	15	82	23	27	22	26	2.00
287352--287426	24	3.2	24	80	12	84	24	25	21	29	1.99
288049--288087	20	2.0	20	84	0	51	28	28	17	25	1.98
288401--288457	19	2.8	20	75	15	55	54	7	0	38	1.28
288739--288793	24	2.3	24	96	0	101	38	9	20	32	1.84
296142--296167	12	2.2	12	100	0	52	57	0	0	42	0.98
301000--301323	172	1.9	170	89	5	501	28	12	12	47	1.76
309904--309945	16	2.5	17	78	21	52	35	0	4	59	1.19
310787--310825	20	1.9	21	89	5	62	33	0	7	58	1.26
315356--315511	76	2.1	76	97	1	296	39	3	7	50	1.48
319993--320026	2	17.0	2	100	0	68	50	0	50	0	1.00
322866--322925	23	2.6	23	86	2	84	61	11	18	8	1.54
328027--328054	2	14.0	2	100	0	56	50	0	0	50	1.00
330808--330855	22	2.2	22	78	14	55	33	6	4	56	1.44
334929--334954	13	2.0	13	100	0	52	0	15	0	84	0.62
336114--336201	29	3.0	28	66	11	68	42	1	22	34	1.61
337643--337693	2	25.5	2	100	0	102	0	49	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337693--337745	2	26.5	2	100	0	106	49	0	0	50	1.00
339559--339664	20	5.4	20	72	11	85	31	26	15	27	1.95
340026--340059	14	2.5	14	95	4	61	26	8	35	29	1.87
340422--340455	12	2.8	12	86	0	50	58	23	0	17	1.38
340582--340635	24	2.2	24	93	0	90	20	18	20	40	1.91
342895--342930	18	2.0	18	94	0	63	55	25	2	16	1.55
343318--343367	25	2.0	25	92	0	82	26	8	20	46	1.78
343713--343749	18	2.1	18	89	0	56	32	5	10	51	1.60
343694--343757	24	2.7	24	78	4	76	35	4	10	48	1.59
344262--344311	20	2.5	20	90	0	73	44	22	18	16	1.87
344315--344368	20	2.7	20	79	0	72	18	16	22	42	1.89
344426--344566	61	2.2	62	81	7	169	49	16	1	32	1.54
345946--346041	21	4.6	21	73	8	79	23	17	34	23	1.96
345946--346041	42	2.3	42	78	7	104	23	17	34	23	1.96
348195--348234	20	2.0	20	90	4	64	10	17	25	47	1.78
348689--348756	20	3.3	20	73	4	73	26	17	23	32	1.97
348744--348797	20	2.7	20	77	11	74	25	14	31	27	1.95
349066--349115	25	2.0	25	96	0	91	24	14	20	42	1.88
349995--350116	31	3.9	31	77	9	131	30	20	19	29	1.97
351051--351282	64	3.6	65	82	4	240	28	18	21	32	1.97
351051--351283	128	1.8	127	80	8	285	27	18	21	32	1.97
353016--353074	31	1.9	31	86	6	84	22	15	16	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369366--369418	21	2.5	21	81	6	72	20	26	18	33	1.96
369448--369501	20	2.7	20	91	0	81	31	25	20	22	1.98
369657--369695	19	2.1	19	85	9	53	17	48	2	30	1.61
369996--370044	20	2.5	20	82	0	62	18	20	26	34	1.95
370191--370245	25	2.2	24	78	15	58	20	9	18	52	1.71
371373--371418	16	2.7	18	86	6	69	28	41	13	17	1.86
371959--372025	20	3.4	20	77	2	64	37	23	22	16	1.94
372014--372072	14	3.9	14	74	20	55	49	22	16	11	1.78
371998--372089	33	2.8	33	93	0	148	47	20	17	14	1.82
371998--372093	19	5.6	19	67	22	68	45	20	18	14	1.85
372097--372155	14	3.9	14	74	20	55	8	16	25	49	1.74
372113--372229	20	6.3	19	77	10	91	13	21	22	42	1.87
372094--372174	33	2.5	33	93	0	135	9	19	23	46	1.80
372177--372255	20	4.0	20	88	0	77	21	17	25	35	1.95
372595--372684	41	2.2	42	85	2	128	23	40	15	21	1.91
372597--372714	42	2.8	42	83	2	114	23	38	16	21	1.93
374091--374129	14	2.8	14	84	0	51	35	0	17	46	1.49
374269--374333	19	3.7	19	84	15	95	46	18	21	13	1.84
374352--374407	20	2.8	20	88	0	85	21	23	16	39	1.92
376687--376711	12	2.1	12	100	0	50	0	28	0	72	0.86
376886--376939	24	2.2	24	90	0	81	40	20	16	22	1.91
377683--377768	20	4.4	20	89	5	122	25	20	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377685--377768	38	2.2	40	86	4	118	26	20	28	25	1.99
379386--379463	40	2.0	40	89	0	120	35	12	10	41	1.77
382079--382110	16	2.0	16	93	0	55	15	12	0	71	1.14
388241--388278	17	2.2	18	85	4	51	78	5	10	5	1.06
389268--389306	17	2.4	17	82	4	53	51	10	0	38	1.36
391004--391127	64	1.9	64	85	3	169	29	17	21	31	1.96
391008--391147	64	2.2	64	80	2	156	31	17	21	29	1.96
391117--391203	19	4.6	19	95	0	147	33	17	26	22	1.96
393697--393731	18	1.9	18	88	0	52	34	0	31	34	1.58
393830--393894	23	2.9	23	73	15	64	30	21	21	26	1.98
399669--399846	64	2.8	62	81	5	198	29	17	23	28	1.97
402992--403020	2	14.5	2	100	0	58	51	0	0	48	1.00
410300--410374	25	3.0	25	100	0	150	32	16	8	44	1.76
419604--419670	22	3.0	22	100	0	134	26	26	26	19	1.99
421310--421354	21	2.1	21	87	0	63	15	24	28	31	1.96
424625--424691	22	3.0	22	100	0	134	26	26	26	19	1.99
426327--426371	21	2.1	21	87	0	63	15	24	28	31	1.96
427204--427444	21	11.6	21	82	7	287	30	23	22	23	1.99
427224--427444	83	2.7	83	93	1	372	31	23	22	23	1.99
427204--427463	62	4.2	63	83	9	311	31	23	22	23	1.99
427453--427629	21	8.6	21	79	8	184	22	19	26	31	1.98
427367--427548	62	2.9	63	82	7	176	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427581--427650	21	3.5	19	72	12	59	20	18	22	38	1.93
427479--427654	42	4.3	40	80	9	187	21	18	25	34	1.96
427747--427784	6	6.5	6	90	3	51	28	52	15	2	1.56
428201--428441	131	1.8	131	95	0	437	12	28	33	25	1.93
428516--428644	21	6.3	21	75	12	124	32	27	19	20	1.97
428513--428626	41	2.8	40	87	6	167	33	25	20	21	1.97
428659--428836	21	8.6	21	76	11	170	23	22	23	31	1.98
428633--428758	62	2.0	62	93	0	216	24	22	20	32	1.98
428612--428836	83	2.7	83	87	6	235	24	23	20	30	1.99
428684--428820	41	3.3	41	82	9	197	23	21	22	32	1.98
428640--428836	62	3.2	61	83	9	215	23	22	21	31	1.98
431622--431782	64	2.5	64	77	11	161	36	18	19	26	1.94
434921--435077	64	2.5	64	78	10	169	35	20	18	26	1.95
435604--435637	15	2.3	15	100	0	68	14	17	32	35	1.91
437304--437381	33	2.4	33	76	20	83	52	2	5	39	1.37
443318--443378	20	2.9	21	82	9	79	32	22	24	19	1.97
444266--444421	31	5.0	31	91	1	242	20	19	22	37	1.94
444879--444921	21	2.0	21	82	8	52	32	4	13	48	1.63
447186--447228	17	2.6	16	78	7	50	34	0	25	39	1.56
448196--448240	22	2.0	22	86	4	63	28	31	26	13	1.94
449049--449204	31	5.0	31	92	1	242	21	18	21	38	1.93
449660--449702	21	2.0	21	82	8	52	32	4	13	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453493--453541	26	1.9	25	84	12	64	57	16	6	20	1.60
453674--453726	15	3.5	15	100	0	106	39	0	54	5	1.24
462693--462719	12	2.2	12	100	0	54	22	22	7	48	1.75
464614--464660	14	3.4	14	100	0	94	51	14	6	27	1.67
464671--464710	2	20.0	2	100	0	80	50	0	0	50	1.00
468485--468528	3	14.7	3	100	0	88	65	0	0	34	0.93
473366--473481	56	2.1	55	92	6	198	25	25	27	21	1.99
473661--473995	165	2.0	165	99	0	661	40	12	8	37	1.74
477530--477558	10	2.9	10	100	0	58	27	31	0	41	1.56
482382--482426	23	1.9	24	82	13	58	37	4	4	53	1.41

Tables:   1   2   3   4   5   6   7