genome.fa.s8011.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008011.1 Hibiscus syriacus cultivar Beakdansim tig00110474_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1648842

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 811 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590940--591033	20	4.7	20	84	7	136	20	20	20	39	1.93
590940--591033	41	2.3	40	89	5	136	20	20	20	39	1.93
597473--597565	21	4.5	21	78	4	100	39	18	24	17	1.91
597554--597688	20	6.7	20	78	7	112	32	24	17	25	1.97
597473--597565	41	2.3	41	100	0	186	39	18	24	17	1.91
597856--597899	22	2.0	22	95	0	79	20	45	15	18	1.85
598162--598220	20	3.0	20	87	0	73	16	18	22	42	1.89
599539--599583	18	2.5	18	88	0	72	26	44	15	13	1.83
600071--600137	20	3.4	20	81	2	73	38	23	22	14	1.92
600126--600189	14	4.4	14	80	16	76	50	23	15	10	1.76
600110--600200	32	2.8	33	93	3	157	48	21	17	12	1.80
600217--600274	14	3.9	14	79	16	71	8	17	25	48	1.75
600212--600290	32	2.4	33	95	2	142	10	18	24	46	1.80
600231--600348	20	6.4	19	77	11	95	13	20	24	41	1.88
602174--602209	14	2.6	14	90	0	54	30	0	22	47	1.52
602317--602366	14	3.0	17	75	24	61	48	18	22	12	1.80
602308--602361	14	3.5	14	75	22	54	48	18	20	12	1.81
602289--602366	33	2.4	33	88	0	111	42	20	23	14	1.88
602385--602442	20	2.9	20	92	0	98	17	22	20	39	1.92
603489--603547	24	2.5	24	82	0	73	28	16	18	35	1.93
606008--606132	32	3.8	33	85	3	182	43	19	22	15	1.88
606009--606133	65	1.9	64	93	1	214	42	20	22	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606132--606175	20	2.3	19	77	11	54	13	15	22	47	1.81
606311--606347	14	2.6	14	91	0	65	45	24	0	29	1.53
607694--607763	21	3.3	21	70	4	61	20	20	35	24	1.96
607694--607816	42	2.9	41	80	7	122	22	17	36	22	1.95
609813--609930	19	6.1	19	80	5	130	45	21	22	11	1.82
609813--609930	39	3.1	38	80	8	139	45	21	22	11	1.82
609813--609925	58	1.9	58	82	7	140	46	21	21	10	1.81
609926--609992	19	3.5	19	83	2	89	8	16	23	50	1.73
610507--610559	20	2.7	20	93	0	88	26	20	28	24	1.99
610568--610621	20	2.7	20	97	0	99	25	18	24	31	1.97
610508--610624	61	1.9	61	85	0	162	23	17	24	33	1.97
610610--610660	20	2.5	20	83	0	66	15	25	19	39	1.91
611407--611451	21	2.1	21	87	0	63	31	28	24	15	1.96
612260--612337	31	2.5	31	78	12	79	23	19	23	34	1.96
612310--612528	30	7.3	30	95	1	395	23	23	24	29	1.99
612310--612528	89	2.4	90	96	0	395	23	23	24	29	1.99
612805--612839	2	17.5	2	100	0	70	48	0	0	51	1.00
615696--615740	21	2.1	21	87	0	63	31	28	24	15	1.96
615763--615800	20	1.9	20	94	0	67	26	36	28	7	1.84
616568--616645	31	2.5	31	78	12	79	23	19	23	34	1.96
616618--616837	30	7.3	30	96	0	395	23	22	24	30	1.99
617108--617150	2	21.5	2	100	0	86	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619001--619072	30	2.3	32	83	4	85	38	1	9	50	1.44
619019--619089	31	2.3	31	78	9	74	40	0	11	47	1.39
622380--622418	19	2.0	20	90	5	62	35	0	0	64	0.94
626548--626593	12	3.6	12	81	16	56	45	17	19	17	1.85
626554--626594	12	3.1	13	80	19	57	46	14	17	21	1.84
628485--628510	2	13.0	2	100	0	52	50	0	0	50	1.00
628728--628855	31	4.1	31	80	9	143	26	17	21	34	1.96
628731--628854	63	2.0	62	88	4	187	27	18	20	33	1.96
628814--628889	30	2.5	31	80	6	84	21	18	26	34	1.96
631549--631588	21	1.9	21	94	0	71	30	15	7	47	1.72
631583--631681	33	3.0	33	92	1	155	33	7	13	46	1.70
631667--631721	13	4.2	13	75	13	58	34	3	12	49	1.59
631917--631994	21	3.7	21	98	0	147	21	28	25	24	1.99
632161--632216	15	3.6	15	79	9	67	32	12	12	42	1.80
632180--632213	18	1.9	18	94	5	61	38	11	11	38	1.79
632307--632338	16	2.0	17	88	11	50	43	21	21	12	1.86
634532--634588	28	2.0	29	86	3	80	31	24	22	21	1.98
637382--637536	53	3.0	53	85	3	208	49	14	16	18	1.79
638676--638706	2	15.5	2	100	0	62	51	0	0	48	1.00
639635--639719	41	2.1	41	100	0	170	44	23	8	23	1.80
644740--644767	14	2.0	14	100	0	56	28	7	28	35	1.84
644868--645182	149	2.1	149	95	1	569	27	16	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645150--645194	23	2.0	23	86	0	63	24	26	24	24	2.00
648732--648763	16	2.0	16	100	0	64	43	0	0	56	0.99
650881--650925	22	2.1	21	83	4	54	60	0	2	37	1.09
652679--652714	2	18.0	2	100	0	72	50	0	0	50	1.00
655581--655664	32	2.7	31	73	14	82	27	33	22	16	1.96
655809--655912	12	8.7	12	69	8	77	54	16	13	15	1.71
655809--655910	36	2.8	36	77	2	98	54	16	12	15	1.70
655826--655910	24	3.5	24	80	6	91	56	15	12	15	1.68
660789--660941	44	3.5	45	72	7	118	56	7	12	24	1.61
661510--661582	36	2.0	37	84	10	96	47	1	4	46	1.30
666063--666109	24	2.0	24	84	16	62	19	4	59	17	1.53
666082--666134	15	3.3	15	70	14	52	15	9	58	16	1.62
666082--666151	33	2.1	33	84	5	88	14	11	58	15	1.63
667817--669350	772	2.0	762	83	5	1930	28	17	20	33	1.96
672753--672806	2	27.0	2	100	0	108	50	0	0	50	1.00
682905--682930	10	2.6	10	100	0	52	46	34	11	7	1.69
687875--687902	3	9.3	3	100	0	56	32	32	0	35	1.58
688964--689009	23	2.0	23	83	8	58	26	4	10	58	1.50
692123--692172	25	2.0	25	92	3	84	34	12	10	44	1.75
692414--692467	21	2.6	21	81	0	63	31	20	27	20	1.97
692549--692661	60	1.9	60	90	0	181	25	15	29	29	1.96
692691--692734	18	2.4	18	92	0	70	22	4	29	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
693492--693584	46	2.0	46	95	4	170	35	2	24	37	1.68
704665--704767	35	2.9	36	82	7	138	32	3	19	44	1.69
709285--709345	21	3.2	21	65	29	64	32	3	21	42	1.69
709277--709385	35	3.0	36	90	5	175	30	4	20	44	1.71
718583--718613	2	15.5	2	100	0	62	51	0	0	48	1.00
730983--731021	17	2.3	17	81	0	51	56	15	12	15	1.68
732434--732994	51	10.8	51	87	4	653	28	26	15	29	1.96
732438--732994	153	3.6	154	88	3	719	28	26	15	29	1.96
734137--734245	27	4.0	28	72	15	77	4	22	0	72	1.08
734170--734217	13	3.8	13	77	5	53	6	20	2	70	1.19
734126--734241	45	2.6	45	79	12	116	5	22	0	71	1.11
734132--734257	17	7.1	18	74	23	83	4	21	0	73	1.07
744406--744430	13	1.9	13	100	0	50	64	24	0	12	1.27
745811--745849	17	2.3	17	81	0	51	56	15	12	15	1.68
748006--748138	20	6.6	20	77	10	110	36	24	15	23	1.94
748067--748177	20	5.7	20	89	4	127	40	24	13	21	1.89
748106--748178	19	3.8	19	90	1	110	41	23	12	23	1.88
748922--748955	12	2.8	12	90	0	50	55	29	0	14	1.40
751388--751423	18	2.0	18	94	0	63	55	25	2	16	1.55
751866--752006	61	2.2	63	83	8	171	50	17	1	31	1.54
753262--753326	21	3.1	21	76	12	62	24	15	32	27	1.95
753278--753321	21	2.2	20	88	11	65	27	15	29	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755799--755845	22	2.1	22	92	0	76	23	12	40	23	1.89
755973--756036	20	3.2	20	78	8	76	21	15	20	42	1.89
761401--761451	20	2.5	20	78	12	68	25	19	19	35	1.95
779976--780019	21	2.1	21	83	8	54	36	4	11	47	1.60
780197--780263	33	2.0	34	91	2	109	29	8	20	40	1.83
780286--780326	6	6.8	6	100	0	82	17	31	0	51	1.46
785991--786305	149	2.1	149	97	1	587	26	16	21	35	1.94
786273--786317	23	2.0	23	90	0	72	22	26	26	24	2.00
805225--805290	16	4.3	16	71	21	52	3	30	0	66	1.06
805252--805299	16	3.4	16	68	31	54	4	29	0	66	1.10

Tables:   1   2   3   4   5   6   7