genome.fa.s8026.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008026.1 Hibiscus syriacus cultivar Beakdansim tig00110502_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  525378

Tables:   1   2   3   4   

This is table  1  of  4  ( 401 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6138--6187	26	1.9	26	92	8	84	26	12	16	46	1.81
9935--10001	26	2.6	27	76	11	68	59	2	4	32	1.32
10348--10379	16	2.0	16	100	0	64	25	18	6	50	1.70
10454--10537	20	4.3	19	89	5	116	21	21	9	47	1.79
25250--25376	66	1.9	66	85	0	173	37	22	18	22	1.94
26044--26620	285	2.0	285	98	0	1118	28	15	17	38	1.90
37907--38017	24	4.6	24	86	4	152	26	12	20	40	1.88
42478--42592	24	4.8	24	88	4	169	27	13	19	40	1.88
42494--42532	12	3.2	12	79	13	53	28	12	23	35	1.91
44359--44391	14	2.4	14	85	15	50	21	12	0	66	1.23
45384--45429	21	2.2	20	85	11	58	39	0	8	52	1.33
52340--52384	18	2.5	18	85	0	54	31	35	4	28	1.77
52890--52996	45	2.3	46	98	1	207	37	13	5	43	1.67
53307--53362	7	7.9	7	75	11	51	46	0	0	53	1.00
53306--53362	11	4.5	14	74	17	54	47	0	0	52	1.00
53321--53394	23	3.1	23	73	11	69	48	1	0	50	1.09
53306--53392	18	4.8	17	72	17	59	47	1	0	51	1.08
53336--53393	12	4.8	13	79	10	61	50	1	0	48	1.11
55779--56206	214	2.0	214	100	0	856	28	20	20	30	1.97
58513--58558	19	2.3	20	81	7	58	28	28	17	26	1.98
58593--58667	21	3.5	22	94	3	127	20	26	16	37	1.93
58593--58769	21	8.5	21	72	12	62	27	23	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58715--58855	61	2.3	62	75	6	144	35	18	19	26	1.95
58657--58850	20	9.6	20	72	9	108	36	19	20	24	1.95
58635--58828	102	1.9	102	81	6	232	32	21	19	26	1.97
58759--58850	41	2.3	40	86	1	121	40	18	21	19	1.92
59369--59465	34	2.9	34	89	1	142	42	20	23	13	1.88
59363--59481	19	6.7	19	67	20	78	44	21	21	12	1.85
59496--59555	14	3.9	14	74	19	57	10	25	20	45	1.81
59480--59575	33	2.9	33	93	1	165	11	23	18	45	1.82
59477--59599	20	6.9	18	73	20	82	11	24	17	46	1.81
62335--62414	42	1.9	42	87	5	117	20	13	42	23	1.88
62360--62414	21	2.6	21	72	11	58	21	12	40	25	1.89
62641--62720	20	4.1	19	83	3	70	36	26	17	20	1.94
62666--62738	20	3.7	20	88	0	110	36	24	23	15	1.93
62725--62783	19	3.4	19	70	29	67	45	20	20	13	1.84
62744--62799	14	3.6	14	71	28	51	42	25	21	10	1.85
62725--62804	33	2.4	33	97	0	151	45	22	21	11	1.83
62816--62907	33	2.8	33	96	0	166	11	19	21	46	1.82
62811--62907	19	5.6	19	67	30	74	12	20	21	45	1.84
62892--62946	20	2.8	19	83	8	65	16	23	23	36	1.94
62888--63047	80	2.0	80	100	0	320	18	21	18	41	1.91
62972--63026	20	2.8	19	83	8	65	16	23	23	36	1.94
63565--63609	18	2.5	18	88	0	72	13	15	42	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64926--64968	21	2.0	21	90	0	68	53	20	16	9	1.70
65246--65289	22	2.0	22	90	0	70	20	15	43	20	1.88
65482--65540	20	2.9	21	90	5	95	28	13	28	28	1.94
65483--65589	20	5.3	20	74	12	85	26	15	25	32	1.96
65456--65593	41	3.4	41	75	13	140	24	15	23	36	1.94
65456--65590	20	6.7	20	72	10	78	25	16	23	34	1.95
65523--65611	41	2.2	41	83	4	108	23	19	21	35	1.95
65888--65936	21	2.3	21	100	0	98	24	4	6	65	1.33
74857--75259	190	2.1	191	85	4	546	39	6	9	43	1.65
76530--76595	29	2.3	29	78	5	71	36	3	22	37	1.70
82762--82827	33	2.0	33	93	0	114	37	7	22	31	1.82
83856--83918	29	2.2	29	82	5	74	38	3	22	36	1.70
87694--88042	190	1.8	190	87	3	524	38	6	10	45	1.63
91480--91868	191	2.0	191	84	3	498	37	7	10	44	1.67
92827--92867	18	2.1	21	86	13	61	73	9	4	12	1.24
92827--92867	20	2.2	18	86	8	55	73	9	4	12	1.24
94420--94500	35	2.3	36	91	6	130	44	23	0	32	1.54
94420--94516	36	2.7	35	87	1	131	42	27	1	28	1.62
95000--95292	148	2.0	148	94	1	516	47	10	7	34	1.66
95464--95550	36	2.4	36	84	7	106	31	2	21	44	1.65
95859--95955	37	2.6	37	88	0	140	42	16	9	31	1.80
96455--96488	2	17.5	2	93	6	61	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96452--96494	10	4.7	9	91	8	61	44	0	0	55	0.99
96491--96540	21	2.3	21	79	3	55	22	6	2	70	1.20
96694--96731	8	4.6	8	84	15	51	23	0	0	76	0.79
96695--96728	10	3.6	10	92	7	54	23	0	0	76	0.79
96694--96753	18	3.3	18	79	11	68	25	1	0	73	0.93
96703--96753	20	2.5	21	84	9	61	23	1	0	74	0.92
101446--101503	20	2.9	20	77	12	66	81	6	10	1	0.95
101445--101503	27	2.2	27	81	6	66	81	6	10	1	0.94
101445--101503	13	4.4	13	75	14	57	81	6	10	1	0.94
102335--102395	24	2.5	24	94	0	104	37	19	1	40	1.62
103059--103134	36	2.1	37	87	7	111	25	23	14	36	1.93
103130--103164	16	2.2	16	89	0	52	22	17	11	48	1.79
103303--103374	37	1.9	37	85	0	99	26	20	12	40	1.88
103909--104005	43	2.3	43	94	0	176	29	28	18	22	1.97
104014--104645	106	6.0	106	86	2	844	34	24	18	22	1.96
105393--105497	37	2.8	37	82	0	120	40	12	13	33	1.82
105892--105932	2	20.5	2	94	0	73	46	0	2	51	1.14
106155--106184	15	2.0	15	93	0	51	23	0	0	76	0.78
106229--106270	9	4.9	9	82	8	52	23	0	0	76	0.79
106219--106288	18	3.7	18	73	17	61	25	1	0	72	0.92
106360--106405	19	2.5	19	83	13	60	17	8	0	73	1.07
111330--111374	22	2.0	22	100	0	90	31	8	26	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116265--116316	20	2.6	20	100	0	104	26	19	23	30	1.98
130169--130193	3	8.3	3	100	0	50	32	0	68	0	0.90
135275--135329	20	2.8	20	85	0	83	27	32	27	12	1.93
135306--135397	33	2.8	33	88	3	116	27	28	35	8	1.86
135274--135362	43	2.2	40	81	6	106	26	30	31	11	1.91
135434--135498	33	2.0	33	90	0	103	12	38	21	27	1.89
135496--135569	14	5.3	14	95	0	121	8	29	36	25	1.85
137338--137383	3	15.3	3	95	0	83	67	2	0	30	1.03
137409--137585	2	89.0	2	70	19	104	47	2	5	44	1.39
137959--138006	14	3.3	14	82	8	60	52	4	0	43	1.20
138177--138218	16	2.6	16	85	7	59	42	9	19	28	1.82
138843--138882	2	20.0	2	100	0	80	50	0	0	50	1.00
141912--141943	17	1.9	16	93	6	55	71	0	0	28	0.86
141941--141972	15	2.1	15	94	0	55	34	6	9	50	1.60
142367--142515	5	28.0	5	74	22	78	40	0	7	52	1.29
142367--142633	7	38.6	7	68	18	89	38	2	7	50	1.47
142373--142513	22	6.4	21	79	16	103	40	0	7	51	1.31
142370--142523	27	5.6	27	87	5	163	40	0	7	51	1.36
142426--142631	27	7.5	28	74	15	166	39	3	7	48	1.50
142667--142725	27	2.2	27	100	0	118	32	20	15	32	1.93
143118--143584	37	13.0	36	82	11	430	44	2	6	46	1.43
143118--143525	73	5.6	73	86	6	487	44	3	5	46	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151591--151651	28	2.1	30	81	6	72	37	1	14	45	1.55
151619--151709	14	6.8	14	70	12	57	34	4	16	45	1.67
151658--151705	25	1.9	25	83	8	62	31	4	18	45	1.68
151824--151866	3	14.3	3	100	0	86	65	0	0	34	0.93
152028--152066	2	19.5	2	100	0	78	51	0	0	48	1.00
152243--152276	13	2.6	14	86	13	54	52	0	0	47	1.00
153023--153068	19	2.4	20	71	10	51	54	4	2	39	1.32
153092--153131	2	20.0	2	100	0	80	50	0	0	50	1.00
159296--159464	92	1.8	91	83	1	221	23	17	29	29	1.97
162560--162634	25	3.0	25	96	0	132	38	21	17	22	1.93

Tables:   1   2   3   4