genome.fa.s8026.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008026.1 Hibiscus syriacus cultivar Beakdansim tig00110502_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  525378

Tables:   1   2   3   4   

This is table  3  of  4  ( 401 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362928--362987	22	2.7	22	100	0	120	10	26	38	25	1.87
366558--366626	23	3.0	23	82	0	84	26	23	27	23	2.00
366645--366845	101	2.0	100	91	3	323	36	23	12	26	1.91
370201--370234	11	2.9	12	82	8	52	32	20	14	32	1.93
370560--370720	42	3.8	42	81	8	186	30	23	7	38	1.82
370561--370720	44	3.8	42	84	6	164	30	23	7	38	1.83
370805--370849	19	2.2	21	76	19	58	33	24	20	22	1.97
370811--370852	19	2.2	19	95	0	75	26	30	21	21	1.98
373515--373562	18	2.7	18	100	0	96	29	20	16	33	1.95
374253--374420	84	2.0	83	98	1	327	34	17	13	34	1.89
374399--374464	33	2.0	33	100	0	132	39	15	12	33	1.84
378288--378333	23	2.0	23	95	0	83	34	15	0	50	1.44
379456--379608	55	2.8	56	90	2	245	29	18	13	38	1.89
379456--379665	55	3.8	55	84	5	230	30	16	11	40	1.84
382143--382190	20	2.4	19	80	10	51	54	8	2	35	1.42
388254--388305	19	2.5	19	84	12	59	30	15	28	25	1.96
389462--389504	15	2.9	15	100	0	86	30	0	27	41	1.56
389710--389752	21	2.0	21	95	0	77	23	16	27	32	1.96
391254--391307	29	1.9	28	88	7	83	33	22	3	40	1.71
392222--392316	31	3.2	30	67	24	83	45	7	12	34	1.70
392203--392337	59	2.3	60	93	3	238	46	8	11	33	1.70
392243--392343	31	3.4	31	62	12	75	46	7	10	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396278--396305	6	4.7	6	100	0	56	53	0	17	28	1.44
398044--398106	25	2.6	25	73	12	76	41	11	3	44	1.56
401374--401630	55	4.7	55	89	2	360	29	21	19	30	1.97
401378--401630	109	2.3	108	88	4	366	29	20	19	30	1.97
403564--403616	26	2.0	27	96	3	99	22	24	15	37	1.92
407903--408087	94	2.0	94	83	2	237	33	17	22	27	1.96
407905--408124	94	2.3	94	81	3	228	33	16	22	27	1.95
408336--408542	55	3.8	55	83	4	240	29	21	17	31	1.96
414559--414666	32	3.5	31	75	14	82	32	25	23	18	1.97
415680--415749	34	2.1	32	86	5	95	32	15	30	21	1.94
418334--418372	16	2.4	16	86	4	51	17	2	0	79	0.84
419318--419441	21	5.9	21	63	14	67	23	18	22	35	1.96
419335--419434	42	2.4	42	86	0	128	23	16	23	38	1.93
420181--420263	21	4.0	21	84	9	107	32	21	22	22	1.98
420272--420448	21	8.5	21	77	16	172	23	22	23	30	1.99
420272--420434	62	2.6	62	98	0	308	24	22	22	30	1.99
421513--421552	14	2.7	15	88	7	55	57	12	20	10	1.63
422457--422536	23	3.4	24	81	5	92	28	8	11	51	1.67
422451--422500	24	2.0	26	88	7	77	26	6	16	52	1.66
422652--422693	20	2.0	20	90	4	66	16	11	7	64	1.48
422709--422760	26	2.0	26	96	0	95	36	11	9	42	1.74
423696--423734	2	19.5	2	100	0	78	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423863--423912	3	17.7	3	81	8	52	32	2	2	64	1.16
425714--425746	2	16.5	2	100	0	66	48	0	0	51	1.00
430020--430072	17	2.8	19	76	23	58	33	5	1	58	1.32
434027--434127	3	33.7	3	100	0	202	0	33	0	66	0.92
440562--440628	30	2.2	31	86	5	91	31	17	13	37	1.89
440994--441217	117	1.9	117	83	5	292	54	5	11	28	1.59
443157--443191	12	2.8	13	86	4	54	65	0	2	31	1.07
444157--444198	2	21.5	2	87	4	50	54	2	2	40	1.26
444388--444427	9	4.6	9	84	6	55	50	0	2	47	1.14
444406--444460	21	2.7	20	81	10	67	49	1	1	47	1.23
444444--444529	13	6.1	13	70	17	64	48	8	3	39	1.50
444529--444559	2	15.5	2	93	0	53	0	0	45	54	0.99
444629--444710	2	42.0	2	79	13	91	51	2	1	45	1.22
444948--445021	37	2.1	36	87	5	105	41	9	9	39	1.70
445023--445089	2	33.0	2	83	8	82	50	5	0	43	1.26
445255--445328	37	2.1	36	87	5	105	41	9	9	39	1.70
445314--445361	20	2.5	20	89	3	71	45	4	8	41	1.53
444884--445665	308	2.6	298	89	5	927	45	10	6	37	1.66
445330--445378	2	24.0	2	80	12	55	51	2	2	44	1.24
445405--445456	7	7.4	7	73	0	50	48	30	0	21	1.51
445405--445457	21	2.5	21	84	0	70	47	30	0	22	1.52
444838--445665	307	2.7	306	90	3	1249	44	10	7	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445574--445731	57	2.7	58	81	11	180	39	9	9	41	1.70
445645--445678	15	2.4	14	90	5	50	44	8	5	41	1.60
445654--445716	22	3.0	21	76	19	67	41	7	6	44	1.59
445760--445807	21	2.3	21	88	0	69	41	6	6	45	1.54
445847--445925	36	2.2	36	83	0	104	44	3	8	43	1.53
445847--445937	36	2.5	36	81	0	101	42	4	8	43	1.55
446013--446126	35	3.5	31	70	13	77	42	4	3	50	1.39
446162--446223	15	4.2	15	82	12	83	46	0	1	51	1.10
446164--446249	24	3.3	28	83	15	105	46	0	2	51	1.13
446110--446248	65	2.1	65	81	9	156	46	2	2	48	1.29
446471--446518	20	2.4	20	80	16	55	20	37	2	39	1.65
446948--446986	12	3.2	12	81	0	51	41	46	5	7	1.55
446958--447017	6	10.0	6	77	0	57	43	46	5	5	1.47
446964--447014	18	2.8	18	84	0	75	43	45	5	5	1.52
446939--446993	24	2.2	24	87	3	74	41	45	5	7	1.55
449491--449544	23	2.3	24	96	3	101	48	9	0	42	1.35
449564--449626	12	4.8	13	75	12	58	42	3	1	52	1.27
449564--449633	13	5.4	12	76	17	52	45	2	1	50	1.25
449844--449907	16	4.0	16	83	0	83	37	14	26	21	1.92
450129--450188	26	2.3	26	91	0	93	21	20	16	41	1.90
450420--450463	21	2.1	21	91	0	70	31	31	18	18	1.95
450423--450472	21	2.4	21	86	0	64	36	30	18	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450484--450698	21	10.4	21	77	9	212	21	20	25	33	1.97
450468--450698	61	3.8	60	85	6	295	21	19	24	34	1.97
450505--450726	103	2.2	102	89	3	329	22	19	23	34	1.97
450628--450726	42	2.4	42	92	0	162	23	19	22	35	1.96
451454--451480	6	4.5	6	100	0	54	0	14	51	33	1.43
451499--451568	21	3.4	21	84	7	99	18	18	30	32	1.95
451490--451638	42	3.6	42	85	1	203	22	20	21	35	1.96
451560--451631	21	3.4	21	72	14	76	20	20	19	38	1.93
451490--451639	61	2.4	58	74	14	149	23	20	21	35	1.96
451728--451754	6	4.5	6	100	0	54	33	51	14	0	1.43
451854--451931	39	2.0	39	90	2	122	26	23	19	30	1.98
452506--452703	19	9.7	19	76	13	144	34	23	19	21	1.96
452506--452613	42	2.6	42	89	0	162	36	21	20	22	1.96
452534--452685	61	2.5	61	94	2	259	34	25	19	19	1.96
452506--452703	42	4.8	38	77	13	153	34	23	19	21	1.96
452534--452703	61	2.8	60	88	7	225	34	25	19	20	1.96
452699--452751	21	2.5	21	93	0	88	16	20	32	30	1.95
453244--453328	36	2.4	36	93	0	143	68	2	2	27	1.14
453271--453330	17	3.4	17	74	17	68	70	3	0	26	1.03
453404--453578	87	2.0	87	94	0	305	29	13	33	24	1.93
454005--454063	10	5.7	10	80	7	64	69	1	5	23	1.18
454005--454063	21	2.8	20	78	16	66	69	1	5	23	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454113--454186	29	2.5	31	77	18	77	52	0	4	43	1.20
455040--455098	10	5.8	10	78	4	64	23	1	5	69	1.18
457713--458868	222	5.2	222	90	1	1708	30	20	18	30	1.96
457732--458868	443	2.6	444	90	1	1749	30	20	18	30	1.96
461550--461610	27	2.3	27	91	5	97	65	3	1	29	1.18
463899--463934	18	2.0	18	94	0	63	38	16	2	41	1.63
463980--464015	18	2.0	18	94	0	63	38	16	2	41	1.63
463877--464085	81	2.6	81	98	0	400	34	16	12	35	1.87
465526--465773	130	1.9	130	93	0	424	35	14	13	36	1.85
465540--465804	130	2.0	129	81	4	309	38	12	13	34	1.83

Tables:   1   2   3   4