genome.fa.s8026.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008026.1 Hibiscus syriacus cultivar Beakdansim tig00110502_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  525378

Tables:   1   2   3   4   

This is table  2  of  4  ( 401 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162591--162729	60	2.3	60	93	0	242	37	17	16	28	1.91
162512--162694	85	2.2	85	95	0	330	36	18	17	27	1.93
162616--162739	35	3.9	34	74	21	131	37	16	16	30	1.90
174158--174652	55	9.0	55	89	2	692	36	18	10	33	1.86
179821--180200	55	6.9	55	92	1	593	35	18	11	33	1.87
185333--185446	60	1.9	58	81	10	133	33	20	24	21	1.97
187346--187391	17	2.7	17	86	10	67	28	23	23	23	2.00
188497--188543	24	2.0	23	83	8	58	55	14	2	27	1.51
189192--189238	18	2.6	18	89	0	76	31	44	4	19	1.70
196385--196425	21	2.0	21	90	0	64	29	14	24	31	1.95
208001--208028	14	2.0	14	100	0	56	35	21	7	35	1.81
208484--208633	78	1.9	79	86	4	214	45	6	10	38	1.62
209731--209807	10	7.9	10	73	9	52	16	24	25	32	1.96
209732--209814	19	4.3	18	76	11	76	15	25	27	31	1.96
209731--209807	29	2.6	30	85	8	113	16	24	25	32	1.96
209732--209820	9	9.3	9	78	11	79	15	26	26	30	1.96
209834--209896	5	11.8	5	74	12	54	19	49	22	9	1.76
209817--209903	22	4.0	22	92	0	147	18	45	22	12	1.83
217081--217144	10	6.8	9	77	10	65	18	26	28	26	1.98
217081--217144	19	3.4	18	87	8	74	18	26	28	26	1.98
217090--217148	19	3.1	19	90	7	84	18	27	28	25	1.98
217111--217150	9	4.3	9	84	6	53	15	30	30	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217146--217184	17	2.3	17	100	0	78	17	46	23	12	1.83
229160--229206	24	1.9	24	95	4	76	21	27	23	27	1.99
229163--229232	25	2.8	24	83	14	81	24	28	21	25	1.99
229173--229248	25	3.0	25	81	7	84	26	26	22	25	2.00
234180--234263	25	3.4	25	83	9	93	22	23	22	30	1.99
234204--234279	25	3.0	25	82	3	91	23	27	23	25	2.00
236064--236584	220	2.4	219	92	1	846	22	12	27	37	1.90
236536--236617	32	2.6	32	92	0	137	12	10	36	40	1.78
240292--240369	18	4.4	18	80	7	81	32	10	16	41	1.82
241565--241702	74	1.9	74	86	6	199	43	15	18	22	1.88
241718--241886	88	1.9	88	85	0	230	22	28	17	30	1.97
247939--248038	45	2.2	45	94	0	173	43	3	26	28	1.69
255879--255978	45	2.2	45	94	0	173	43	3	26	28	1.69
256061--256133	18	3.9	18	79	13	85	21	17	31	28	1.97
256294--256346	18	2.9	18	100	0	106	22	16	33	26	1.96
260206--260261	16	3.6	15	79	9	58	7	12	28	51	1.65
260400--260425	13	2.0	13	100	0	52	46	15	7	30	1.74
262162--262186	2	12.5	2	100	0	50	52	0	0	48	1.00
263165--263205	2	20.5	2	100	0	82	51	0	0	48	1.00
263385--263432	2	24.0	2	100	0	96	50	0	0	50	1.00
263987--264101	60	1.9	60	82	7	144	42	10	9	37	1.72
264940--265011	2	36.0	2	100	0	144	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265090--265219	60	2.2	60	83	5	156	33	20	3	41	1.71
271378--271415	20	1.9	20	89	10	60	68	0	5	26	1.11
271398--271433	16	2.2	16	90	0	54	63	0	11	25	1.27
272583--272643	19	3.3	19	77	9	72	6	14	27	50	1.68
272614--272650	18	2.0	19	89	5	58	2	16	35	45	1.61
272825--272867	9	4.7	9	80	13	52	18	13	11	55	1.68
273399--273491	50	1.9	49	91	6	154	47	4	6	41	1.49
273383--273491	47	2.3	47	87	6	157	47	3	7	41	1.49
274895--274921	13	2.1	13	100	0	54	7	7	40	44	1.60
275616--275753	21	6.8	21	76	4	122	36	23	18	21	1.95
275620--275762	40	3.5	39	72	14	110	36	23	18	21	1.95
275620--275758	61	2.3	61	93	0	242	36	23	17	22	1.94
275786--275897	41	2.8	41	87	4	156	22	16	24	37	1.93
275780--275851	21	3.5	21	72	11	76	18	16	25	40	1.91
275928--275973	19	2.4	19	85	3	56	21	17	30	30	1.96
275939--275975	19	1.9	19	94	0	65	21	16	29	32	1.95
292652--292702	25	2.0	25	100	0	102	15	23	19	41	1.90
295983--296039	24	2.4	24	90	0	96	7	24	22	45	1.77
296782--296884	34	3.0	34	62	16	86	32	11	16	39	1.85
301277--301382	36	2.7	38	88	10	144	41	0	1	56	1.10
301294--301360	19	3.6	19	72	18	61	40	0	2	56	1.14
301230--301365	60	2.3	56	80	17	159	41	0	2	55	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301328--301406	17	4.5	17	73	12	61	37	0	1	60	1.05
302004--302061	29	1.9	30	86	6	82	46	8	5	39	1.57
307101--307141	21	2.0	22	90	9	68	31	14	17	36	1.90
307258--307292	11	3.2	11	95	0	61	54	0	17	28	1.43
307882--307980	43	2.3	43	85	5	128	50	6	19	24	1.70
307988--308171	43	4.3	44	80	10	143	47	7	19	26	1.75
307988--308171	41	4.3	42	79	13	155	47	7	19	26	1.75
307988--308128	41	3.3	43	82	7	164	46	7	21	24	1.78
308749--308786	15	2.5	15	91	0	58	50	15	10	23	1.75
309430--309472	14	3.1	14	96	0	77	11	13	16	58	1.64
309726--309794	14	5.1	14	75	5	61	5	8	21	63	1.44
309841--309873	16	2.1	16	100	0	66	12	12	18	57	1.64
309768--309969	71	2.9	71	92	2	320	26	9	13	50	1.72
309912--309952	16	2.7	16	92	7	68	14	9	14	60	1.57
311161--311222	27	2.3	27	94	0	106	40	22	25	11	1.87
315430--315485	15	3.6	15	76	9	67	16	25	35	23	1.94
315494--315526	15	2.3	15	89	5	50	30	0	0	69	0.88
316083--316149	19	3.4	18	73	18	53	41	1	0	56	1.08
317589--317879	72	3.9	71	80	10	268	56	4	4	34	1.40
317658--317870	76	2.9	74	81	10	256	57	6	2	32	1.39
317479--317902	75	5.8	73	76	9	298	55	4	5	35	1.43
317545--317924	149	2.6	150	75	10	361	54	4	5	35	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320146--320211	32	2.0	33	88	2	98	13	21	21	43	1.86
321104--321150	23	2.0	24	88	12	71	38	4	6	51	1.47
325171--325371	101	2.0	102	88	2	298	24	13	14	47	1.81
325171--325371	51	4.0	50	87	3	269	24	13	14	47	1.81
331560--331656	23	4.5	22	78	8	101	21	25	24	27	1.99
335155--335192	16	2.3	17	86	4	51	47	2	0	50	1.15
336818--336865	23	2.2	22	88	7	71	37	0	2	60	1.09
336838--336889	25	2.0	26	85	3	70	34	0	5	59	1.21
337215--337252	18	2.1	18	90	0	58	55	0	2	42	1.14
337554--337597	22	2.0	22	86	13	63	47	0	2	50	1.13
337549--337600	11	5.0	11	77	11	56	48	0	1	50	1.12
339872--339918	21	2.2	21	92	7	78	63	12	10	12	1.52
342399--342429	10	3.1	10	100	0	62	0	9	58	32	1.31
344492--345652	579	2.0	579	97	0	2196	33	9	16	39	1.82
346602--346659	27	2.1	28	90	3	91	56	0	3	39	1.16
346653--346737	24	3.5	24	80	6	100	43	4	2	49	1.36
346657--346867	13	17.0	13	68	20	96	45	6	3	44	1.46
346818--346869	24	2.2	24	86	6	70	48	7	3	40	1.50
346860--346896	8	4.9	8	80	12	51	45	0	2	51	1.15
346836--346899	11	5.6	11	74	20	51	43	3	3	50	1.33
346862--346888	14	1.9	14	100	0	54	44	0	3	51	1.19
347214--347272	13	4.5	13	72	16	50	45	8	3	42	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347262--347305	22	2.0	22	86	0	61	43	13	2	40	1.57
347294--347339	22	2.1	22	91	0	74	47	8	4	39	1.54
349410--349526	60	2.0	60	87	3	173	28	36	16	18	1.92
351614--351673	26	2.3	26	88	0	84	30	20	23	26	1.98
351627--351683	26	2.2	26	83	0	69	38	15	19	26	1.92
353717--353741	11	2.3	11	100	0	50	60	0	20	20	1.37
355573--355615	21	2.0	21	100	0	86	32	18	9	39	1.83
359500--359578	22	3.6	22	71	0	77	27	18	24	29	1.98
361352--361404	23	2.3	22	87	6	79	26	22	28	22	1.99
361424--361628	103	2.0	103	96	0	374	37	23	12	26	1.90

Tables:   1   2   3   4