Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008026.1 Hibiscus syriacus cultivar Beakdansim tig00110502_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  525378

Tables:   1   2   3   4   

This is table  4  of  4  ( 401 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
466099--466161
28
2.3
27
78
8
63
46
1
3
49
1.27
466240--466273
16
2.0
18
88
11
54
64
5
2
26
1.30
466396--466438
21
2.0
21
100
0
86
39
0
13
46
1.44
466407--466492
35
2.5
35
84
0
100
37
1
20
40
1.61
470494--470535
4
10.8
4
84
5
59
71
2
0
26
0.98
470499--470586
18
4.7
19
72
24
71
65
5
1
27
1.22
475915--475997
4
19.0
4
70
20
51
65
2
1
31
1.13
475915--475966
23
2.3
22
93
3
86
67
0
1
30
1.02
475934--476016
18
4.7
18
74
18
57
63
3
2
30
1.24
475972--476024
18
2.8
19
80
11
56
62
5
1
30
1.29
476645--476729
36
2.4
36
85
0
107
48
9
8
34
1.65
478254--478281
13
2.2
13
100
0
56
39
7
14
39
1.73
482004--482037
17
2.1
16
89
10
52
38
0
14
47
1.45
491088--491570
241
2.0
242
99
0
959
28
17
13
40
1.87
494567--494611
23
2.0
23
86
0
63
53
2
2
42
1.25
494935--494978
14
3.1
14
83
0
52
36
13
6
43
1.71
499072--499140
3
23.7
3
77
11
63
31
7
0
60
1.24
499345--499379
4
8.5
4
87
6
52
22
2
0
74
0.95
499336--499394
17
3.5
17
81
6
59
22
1
1
74
1.00
499334--499391
21
2.6
22
86
8
91
22
1
1
74
1.01
504339--504861
286
1.8
287
86
5
763
32
23
18
24
1.97
505339--505838
36
14.4
34
69
20
224
26
19
13
41
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
505397--505453
15
3.5
15
71
17
51
22
22
15
38
1.92
505412--505474
19
3.4
19
70
20
62
25
22
12
39
1.89
505256--505856
165
3.5
169
87
7
713
26
18
13
41
1.88
505691--505838
42
3.8
42
82
9
156
21
19
14
43
1.87
505691--505838
78
1.9
79
88
1
226
21
19
14
43
1.87
505892--505977
34
2.5
34
86
3
129
43
19
6
30
1.78
507893--507950
23
2.6
21
86
8
80
32
8
1
56
1.40
507883--507931
3
16.3
3
79
8
55
32
6
0
61
1.21
508168--508221
17
3.2
16
79
7
54
20
3
1
74
1.07
508180--508223
23
2.0
22
86
13
63
20
2
2
75
1.03
508167--508224
26
2.2
25
80
14
64
18
3
1
75
1.03
508691--508777
42
2.1
42
91
0
138
27
11
43
17
1.83
508846--508931
37
2.3
39
84
9
117
50
0
0
50
1.00
516141--516208
22
3.1
22
74
4
57
35
17
23
23
1.95
520299--520347
22
2.2
22
85
0
62
34
26
20
18
1.95
520417--520454
17
2.2
17
100
0
76
10
36
42
10
1.74
521546--521572
2
13.5
2
100
0
54
51
0
0
48
1.00
521969--522021
21
2.6
21
82
5
65
30
28
16
24
1.97
523539--523568
15
2.0
15
93
0
51
36
20
3
40
1.69

Tables:   1   2   3   4

The End!