genome.fa.s8075.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008075.1 Hibiscus syriacus cultivar Beakdansim tig00110577_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1947163

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1176 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223769--223840	22	3.3	22	88	5	110	27	20	25	26	1.99
223777--223839	21	3.0	21	92	2	99	23	23	26	25	2.00
225217--225377	64	2.5	64	85	5	209	27	20	18	33	1.96
227393--227612	114	1.9	114	91	1	361	30	20	15	33	1.94
231699--231758	27	2.3	27	88	2	86	58	6	13	21	1.58
231818--231856	15	2.6	15	87	0	51	64	10	12	12	1.51
233854--234112	143	1.8	142	84	9	357	47	7	6	38	1.57
234817--234868	13	4.0	13	94	0	86	7	53	28	9	1.61
239747--239793	15	3.1	15	74	17	51	51	14	0	34	1.43
241890--241986	20	4.8	20	80	2	122	14	22	22	40	1.90
248702--248794	31	3.0	30	76	1	87	6	8	23	61	1.48
249087--249231	73	2.0	73	98	0	281	29	20	17	32	1.95
261816--261875	24	2.5	24	100	0	120	45	0	3	51	1.17
268359--268401	22	1.9	23	86	13	63	32	0	4	62	1.15
270954--271075	61	2.0	61	100	0	244	40	9	29	19	1.84
273207--273309	52	2.0	52	86	5	145	54	4	3	36	1.40
283890--283942	19	2.9	18	73	15	63	30	30	18	20	1.97
295569--295629	23	2.7	23	76	2	61	49	1	0	49	1.10
300025--300084	23	2.6	23	94	0	102	43	1	0	55	1.10
301643--301707	22	3.0	22	75	8	69	20	23	26	30	1.98
310315--310399	28	3.0	28	85	0	107	36	18	15	29	1.92
314991--315021	13	2.4	13	100	0	62	32	12	0	54	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320128--320179	20	2.6	21	79	11	56	30	0	25	44	1.54
320360--320386	14	1.9	14	100	0	54	37	0	14	48	1.45
322819--322887	22	3.1	22	93	2	111	37	8	14	39	1.77
323035--323182	30	4.8	30	81	6	170	33	14	22	29	1.93
323686--323734	24	2.0	24	84	7	64	42	4	2	51	1.32
325984--326042	9	6.3	9	76	7	55	33	0	0	66	0.92
325970--326053	38	2.2	38	97	0	159	39	0	0	60	0.97
326444--326511	31	2.2	31	92	5	111	32	10	7	50	1.64
326627--326694	24	2.5	26	77	18	68	57	0	1	41	1.08
327531--327571	18	2.3	18	87	8	57	68	0	7	24	1.15
327694--327754	25	2.4	25	91	2	95	32	9	11	45	1.73
330094--330126	12	2.6	13	85	4	50	42	0	9	48	1.35
333393--333425	15	2.2	15	94	0	57	54	0	0	45	0.99
335854--335880	12	2.2	12	100	0	54	14	14	37	33	1.88
337556--337599	20	2.1	21	87	4	63	56	0	2	40	1.11
337842--337885	19	2.3	19	84	7	63	34	0	6	59	1.24
338161--338226	3	22.0	3	84	0	60	36	3	0	60	1.12
344844--344883	2	20.0	2	94	0	71	50	2	0	47	1.14
352618--352646	2	14.5	2	100	0	58	51	0	0	48	1.00
355222--355419	89	2.2	88	90	4	310	38	10	16	34	1.83
359157--359193	2	18.5	2	100	0	74	51	0	0	48	1.00
359540--359589	22	2.4	21	81	18	61	66	4	0	30	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359546--359590	22	2.1	22	88	12	67	66	4	0	28	1.11
359573--359646	19	4.1	16	71	25	51	66	4	4	25	1.27
361060--361146	3	29.3	3	75	6	52	65	1	0	33	1.00
361507--362167	124	5.5	122	88	4	796	27	18	14	39	1.89
361745--362206	113	4.0	113	85	4	532	27	19	14	38	1.90
362002--362046	23	1.9	23	82	13	56	20	20	6	53	1.67
362559--362622	22	2.9	22	88	0	92	35	12	15	35	1.85
365836--366020	64	2.9	63	82	7	198	33	20	20	25	1.97
365884--366057	64	2.7	64	83	3	190	32	22	20	24	1.97
366369--366415	12	3.9	12	94	0	76	36	2	23	38	1.67
366560--366637	15	5.1	15	95	1	138	15	19	32	33	1.93
372841--373025	64	2.9	63	82	7	198	33	20	20	25	1.97
372889--373062	64	2.7	64	83	3	190	32	22	20	24	1.97
373374--373408	12	2.9	12	100	0	70	34	0	25	40	1.56
373534--373595	15	4.1	15	100	0	124	14	19	32	33	1.92
376790--376874	3	28.3	3	83	4	82	56	1	0	42	1.07
376781--376855	26	2.9	27	82	9	93	53	1	1	44	1.17
377987--378011	9	2.8	9	100	0	50	48	32	8	12	1.69
385494--385531	4	10.0	4	83	11	53	50	23	0	26	1.50
385482--385526	16	2.8	16	83	6	56	51	26	0	22	1.49
385854--385961	38	2.9	35	82	8	117	33	19	12	34	1.90
385884--386050	92	1.8	93	85	6	243	31	17	11	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386162--386255	34	2.7	35	80	5	109	29	19	13	37	1.90
386508--386660	27	5.6	27	85	10	188	29	11	16	43	1.82
386724--387245	67	7.9	67	96	2	923	30	11	11	45	1.77
387059--387174	28	3.8	29	70	22	94	30	11	12	45	1.77
387247--387326	40	2.0	40	95	0	142	31	21	11	36	1.88
387694--387768	35	2.1	36	85	7	100	36	18	10	34	1.86
387744--387921	66	2.7	67	78	5	179	25	20	15	38	1.92
388040--388093	28	1.9	28	85	7	74	22	16	16	44	1.86
388124--388305	46	4.2	45	72	13	146	26	29	18	25	1.98
388157--388357	40	4.8	40	72	12	161	24	31	19	23	1.98
388105--388357	129	2.0	129	97	0	479	25	30	19	24	1.98
388118--388388	129	2.1	129	90	2	420	25	31	18	25	1.98
389028--389052	9	2.8	9	100	0	50	48	32	8	12	1.69
391864--391921	3	19.7	3	87	10	84	32	1	0	65	1.03
391870--391930	12	5.4	11	75	18	54	36	1	0	62	1.05
391879--391930	15	3.3	15	75	19	52	36	1	0	61	1.07
399615--399656	18	2.3	18	84	8	59	54	21	0	23	1.44
399967--400250	156	1.8	153	82	8	362	29	17	12	40	1.86
400311--400408	36	2.8	36	82	3	101	36	18	11	33	1.86
400652--400753	29	3.6	28	83	9	125	28	11	13	46	1.79
400709--400846	62	2.2	63	81	11	151	31	14	10	42	1.80
400963--401006	15	2.9	15	93	0	70	31	20	4	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401429--401793	40	8.6	40	70	16	211	25	31	18	24	1.97
401429--401761	128	2.6	129	94	1	589	25	31	18	24	1.98
401944--401998	3	18.7	3	87	10	78	32	1	0	65	1.03
401950--402007	12	5.4	11	82	16	52	36	1	0	62	1.06
401949--402007	15	4.1	14	81	14	68	35	1	0	62	1.05
407866--407918	21	2.4	23	84	6	74	54	1	1	41	1.22
407941--407987	22	2.1	23	84	11	62	38	2	0	59	1.09
407989--408046	23	2.5	24	78	13	68	51	3	0	44	1.18
410495--410703	65	3.2	66	81	10	236	29	24	18	27	1.98
416411--416486	21	3.5	22	78	12	84	26	23	23	26	2.00
416395--416486	21	4.3	21	76	14	82	29	25	20	25	1.99
418402--418430	14	2.0	15	93	6	51	6	3	27	62	1.37
419061--419150	45	2.0	45	82	10	112	32	21	20	26	1.97
419204--419252	19	2.6	19	84	9	57	24	30	18	26	1.98
420620--420658	15	2.6	15	87	0	60	25	10	2	61	1.41
425453--425554	34	2.9	35	91	4	161	44	12	13	29	1.81
425454--425589	37	3.8	37	86	2	152	42	12	13	31	1.81
425943--425985	18	2.5	17	85	7	61	25	4	2	67	1.22
425980--426061	8	9.4	9	75	17	50	35	4	1	58	1.27
426158--426192	17	2.1	17	88	0	52	42	5	0	51	1.25
426414--426493	40	2.0	40	86	9	112	31	5	8	55	1.52
426548--426581	9	3.8	9	92	7	52	20	2	0	76	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426548--426582	13	2.6	14	90	4	54	20	2	0	77	0.90
429612--429665	22	2.5	22	77	19	60	75	7	14	1	1.09
430267--430310	22	2.0	22	91	8	72	38	22	11	27	1.88
430746--430781	18	2.0	18	88	0	54	16	5	33	44	1.71
431346--431471	37	3.4	36	93	3	216	26	19	12	41	1.87
431261--431672	138	3.0	138	83	2	490	28	20	12	38	1.89
431511--431609	36	2.7	36	87	1	126	26	20	16	37	1.93
432345--433005	105	6.3	105	90	3	958	33	26	18	22	1.96
433553--433654	34	2.9	36	89	5	163	44	13	13	28	1.82
433551--433688	37	3.8	37	84	4	156	42	13	13	31	1.82

Tables:   1   2   3   4   5   6   7   8   9   10