genome.fa.s8075.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008075.1 Hibiscus syriacus cultivar Beakdansim tig00110577_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1947163

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  4  of  10  ( 1176 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
603634--603697	3	21.3	3	100	0	128	32	0	67	0	0.91
616964--616998	2	17.5	2	100	0	70	48	0	0	51	1.00
618026--618085	20	3.0	20	70	27	56	45	0	1	53	1.10
620209--620270	20	3.3	20	64	25	53	35	17	3	43	1.66
620202--620273	36	2.0	36	97	0	135	33	18	2	45	1.63
620360--620451	40	2.3	40	86	3	123	26	22	14	36	1.92
622862--622892	14	2.2	14	100	0	62	35	0	38	25	1.56
622984--623086	3	34.3	3	96	0	188	64	0	0	34	1.01
623403--624154	113	6.6	113	95	0	1155	29	19	14	37	1.90
624916--625143	84	2.7	84	95	1	397	38	21	13	26	1.90
626274--626325	21	2.5	21	84	12	63	0	17	1	80	0.80
638993--639023	14	2.2	14	100	0	62	35	0	38	25	1.56
639120--639262	3	47.7	3	100	0	286	66	0	0	33	0.92
651808--651863	13	4.4	13	77	8	53	25	0	3	71	1.02
651799--651880	32	2.6	33	75	13	91	31	0	2	65	1.05
656689--656730	2	21.0	2	100	0	84	0	50	0	50	1.00
668893--668926	15	2.3	15	100	0	68	52	5	5	35	1.50
669202--669240	14	2.8	14	96	0	69	46	0	2	51	1.14
676632--676680	13	3.8	13	84	10	64	20	44	20	14	1.86
676610--676656	18	2.6	18	96	0	85	21	48	21	8	1.76
676659--676699	18	2.3	18	82	0	55	17	48	19	14	1.81
676613--676704	31	3.0	31	80	6	105	18	45	20	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676694--676737	7	5.5	8	84	15	56	15	34	25	25	1.95
676694--676737	15	2.8	15	93	6	70	15	34	25	25	1.95
679174--679289	24	4.8	24	87	4	162	25	15	18	39	1.91
681387--681474	18	5.2	18	77	18	107	19	47	20	12	1.81
681410--681468	31	1.9	31	92	0	100	20	47	20	11	1.81
681427--681464	13	2.9	14	80	15	53	21	44	21	13	1.85
683937--684052	24	4.8	24	89	4	171	25	16	18	39	1.91
689232--689266	16	2.1	17	89	5	54	57	0	5	37	1.23
701330--701371	18	2.3	18	91	0	66	40	21	16	21	1.91
704310--704465	53	2.8	55	85	5	190	32	26	12	28	1.93
704276--704465	59	3.3	59	80	10	223	31	25	14	28	1.95
707108--707185	29	2.6	31	76	11	81	30	19	5	44	1.72
717793--717883	7	13.4	7	73	6	71	45	34	0	20	1.52
717794--717883	14	6.6	14	75	6	87	45	33	0	21	1.52
717820--717879	21	2.9	21	80	11	79	50	26	0	23	1.50
717954--718048	7	13.6	7	81	4	66	45	32	1	21	1.59
721003--721034	15	2.1	15	94	0	55	56	18	3	21	1.56
723965--724011	14	3.3	14	82	14	60	38	0	2	59	1.09
724262--724314	22	2.4	22	83	3	61	52	1	0	45	1.11
724247--724320	32	2.3	33	86	9	100	55	2	1	40	1.22
724276--724319	22	2.0	22	82	8	54	54	2	0	43	1.12
726010--726038	10	3.0	10	95	5	51	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726278--726332	27	2.0	27	92	0	74	56	12	0	30	1.37
727041--727086	18	2.6	18	96	0	83	28	4	15	52	1.61
729233--729309	24	3.6	22	75	20	67	29	19	25	24	1.98
730512--730596	29	2.9	29	75	3	73	41	7	17	34	1.77
730831--730882	23	2.3	23	89	0	77	17	25	26	30	1.97
732117--732157	19	2.2	19	100	0	82	26	24	4	43	1.74
732386--732795	198	2.1	198	88	3	601	35	15	11	37	1.84
733916--734412	197	2.5	197	85	2	671	32	15	11	39	1.84
734218--734588	176	2.1	177	86	2	523	33	15	11	39	1.83
734566--734622	19	3.0	20	82	5	73	26	17	15	40	1.90
734566--734642	39	2.0	39	82	5	93	27	19	12	40	1.88
737392--737465	21	3.6	21	74	3	87	21	18	25	33	1.96
737413--737545	20	6.6	20	76	8	135	15	22	22	39	1.91
737388--737525	41	3.4	41	90	3	217	18	21	23	37	1.94
737454--737573	60	2.0	62	93	3	208	13	23	22	40	1.89
737413--737596	101	1.8	101	86	6	266	16	21	22	39	1.92
737537--737597	19	3.0	21	69	11	63	19	19	22	37	1.94
737517--737597	41	2.0	41	90	7	128	17	20	22	39	1.92
737728--737793	19	3.3	19	66	12	51	43	21	16	18	1.87
737743--737814	22	3.4	22	70	18	71	38	26	16	18	1.91
737721--737813	41	2.3	41	92	0	150	40	24	15	19	1.90
737803--737866	21	3.1	21	70	4	67	39	26	17	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
737895--738000	20	5.2	20	68	12	63	36	25	18	18	1.94
737902--738004	41	2.5	41	88	0	152	38	25	18	17	1.92
741116--741148	3	11.0	3	100	0	66	66	0	0	33	0.92
743565--743617	26	2.0	26	96	0	97	35	20	9	33	1.85
744187--744229	19	2.3	19	96	4	79	25	0	13	60	1.34
745849--745928	41	2.0	41	97	0	151	22	2	23	51	1.60
746709--746769	27	2.3	27	82	0	68	24	8	45	21	1.78
747904--747992	30	3.0	30	85	4	110	38	19	24	17	1.93
748973--749143	57	3.0	57	90	4	265	53	11	5	29	1.59
762109--762148	15	2.7	15	96	0	71	32	5	40	22	1.76
768479--768518	19	2.0	20	85	9	55	37	0	37	25	1.56
772460--772515	26	2.1	27	93	3	96	44	0	10	44	1.38
790505--790551	3	15.7	3	91	8	78	34	0	0	65	0.93
790507--790549	22	2.0	21	95	4	77	37	0	0	62	0.95
790558--790612	26	2.1	26	89	0	83	40	32	18	9	1.82
791908--791978	15	4.6	15	69	19	56	28	5	1	64	1.24
791937--792025	20	4.0	22	70	25	64	30	3	4	61	1.32
792028--792060	15	2.3	15	89	5	50	42	0	0	57	0.98
792768--792835	18	3.5	18	75	21	57	29	5	2	61	1.34
797395--797442	20	2.4	20	82	0	60	79	2	18	0	0.84
799720--799936	114	1.9	114	90	0	344	33	15	21	29	1.94
801837--801948	54	2.1	54	88	3	163	39	16	21	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
802316--802370	22	2.5	22	90	0	92	34	12	14	38	1.84
803053--803768	76	9.4	76	96	0	1261	22	21	21	34	1.97
803906--803970	3	21.7	3	82	6	78	30	0	1	67	1.00
803977--804031	26	2.1	26	89	0	83	40	32	18	9	1.82
805291--805361	15	4.6	15	69	19	56	28	5	1	64	1.24
805320--805408	20	4.0	22	70	25	64	30	3	4	61	1.32
805411--805443	15	2.3	15	89	5	50	42	0	0	57	0.98
806149--806216	18	3.5	18	75	21	57	29	5	2	61	1.34
813061--813277	114	1.9	114	91	0	353	32	15	22	29	1.95
815640--815694	22	2.5	22	90	0	92	34	12	14	38	1.84
816375--817166	76	10.4	76	96	0	1415	22	21	21	34	1.97
817315--817348	12	2.9	12	91	4	52	26	0	0	73	0.83
817355--817409	26	2.1	26	82	0	65	41	30	16	10	1.83
818706--818755	15	3.3	15	73	15	50	28	6	0	66	1.15
818826--818858	15	2.3	15	89	5	50	42	0	0	57	0.98
820084--820139	15	3.6	15	79	9	67	42	12	12	32	1.80
820087--820137	17	3.1	17	77	11	61	43	11	9	35	1.75
821222--821320	33	3.0	33	94	1	164	45	15	7	32	1.73
821315--821356	21	2.0	21	95	0	75	47	7	14	30	1.71
828799--828834	18	1.9	19	88	5	56	77	2	0	19	0.88
832474--832502	2	14.5	2	100	0	58	51	0	0	48	1.00
834703--834812	56	2.0	56	96	0	202	34	10	11	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
835008--835075	21	3.2	20	70	15	57	22	19	27	30	1.97
835008--835098	42	2.2	42	93	0	155	23	19	25	31	1.98
835027--835105	21	3.8	20	70	15	63	24	20	21	34	1.97
835038--835105	21	3.4	19	69	15	64	25	22	22	30	1.99
835176--835208	6	5.5	6	92	0	57	36	51	12	0	1.39
835893--835933	5	7.5	6	89	10	54	0	17	53	29	1.44
842137--842206	21	3.2	21	74	7	59	24	40	21	14	1.90
844433--844472	19	2.1	19	100	0	80	40	0	17	42	1.49
846037--846145	27	4.3	26	79	11	95	41	4	0	54	1.21
846080--846163	27	3.1	27	80	10	75	39	2	1	57	1.20

Tables:   1   2   3   4   5   6   7   8   9   10