genome.fa.s8078.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008078.1 Hibiscus syriacus cultivar Beakdansim tig00110580_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1434613

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 813 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197879--198148	19	15.5	19	79	16	309	14	20	18	47	1.83
197857--198116	51	4.9	53	84	11	236	15	20	17	46	1.84
197929--198148	52	4.2	53	87	6	297	14	20	18	47	1.83
197879--198116	71	3.4	70	81	13	319	15	20	17	47	1.83
198089--198177	30	3.0	29	86	6	124	13	20	22	43	1.86
201332--201672	20	17.5	20	82	8	364	20	19	26	33	1.97
201332--201633	38	7.7	39	83	8	357	21	19	27	31	1.97
201314--201673	39	9.3	39	82	8	319	20	18	26	33	1.96
204203--204237	18	1.9	18	100	0	70	45	11	5	37	1.64
207834--207913	42	1.9	41	94	2	142	33	16	13	36	1.88
210599--210630	15	2.3	15	89	10	50	34	0	0	65	0.93
215119--215171	23	2.3	23	86	0	70	37	0	3	58	1.16
215120--215190	23	3.1	23	82	6	56	36	1	4	57	1.27
219298--219354	26	2.2	26	84	6	71	45	29	14	10	1.78
234231--234299	33	2.1	33	86	5	95	28	23	39	8	1.84
234303--234358	29	1.9	29	88	0	85	21	28	35	14	1.92
235850--235903	20	2.7	19	75	8	63	33	31	18	16	1.93
235890--236007	21	5.8	19	70	12	65	38	19	18	22	1.93
235953--236005	20	2.7	20	88	11	74	45	24	16	13	1.83
236014--236061	21	2.3	21	92	3	80	35	27	18	18	1.95
236033--236120	20	4.4	21	78	8	69	30	21	20	27	1.98
236982--237035	24	2.2	24	90	0	81	20	16	20	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239550--239706	19	8.7	19	78	16	163	43	19	22	14	1.87
239583--239610	14	2.0	14	100	0	56	42	21	21	14	1.88
239564--239702	33	4.0	33	79	15	154	43	18	22	15	1.87
239549--239706	73	2.2	71	88	3	235	43	18	22	15	1.87
239702--239747	19	2.4	19	92	0	74	15	15	23	45	1.84
239750--239810	19	3.5	19	70	21	60	14	19	18	47	1.82
239917--239953	14	2.6	14	86	0	56	48	21	0	29	1.50
241732--241871	19	7.8	19	71	16	102	46	17	22	14	1.83
241756--241871	52	2.2	52	92	0	196	45	18	23	12	1.83
242011--242390	94	4.1	93	93	1	634	48	18	12	21	1.80
244087--244144	20	2.9	21	80	14	68	43	20	22	13	1.87
244192--244226	17	2.1	17	100	0	70	17	14	22	45	1.84
244223--244358	20	6.8	20	89	5	170	11	18	19	50	1.77
244935--245125	20	9.4	20	79	6	215	19	18	24	36	1.95
244935--245125	40	4.7	40	86	3	258	19	18	24	36	1.95
245964--246014	22	2.3	22	86	0	66	23	45	15	15	1.85
246168--246396	20	11.4	20	65	11	85	34	11	20	32	1.89
246176--246311	40	3.4	40	78	6	143	38	11	20	29	1.88
251000--251049	23	2.2	23	88	0	73	38	8	24	30	1.84
251078--251125	23	2.1	23	84	7	62	37	10	18	33	1.85
250963--251125	87	1.9	87	94	0	290	41	12	15	30	1.85
251153--251599	197	2.2	197	80	7	494	32	15	13	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256411--257000	182	3.2	179	88	2	829	27	17	12	42	1.85
259768--259797	15	1.9	16	93	6	53	46	0	0	53	1.00
262560--262599	2	20.0	2	94	0	71	47	0	2	50	1.14
265240--265292	20	2.8	19	80	8	72	18	22	30	28	1.98
265659--266284	4	159.2	4	95	4	1150	24	0	25	50	1.50
274379--274420	18	2.2	20	79	8	52	40	4	14	40	1.67
274782--274839	27	2.1	27	93	0	98	27	8	27	36	1.86
275121--275145	2	12.5	2	100	0	50	48	0	0	52	1.00
275511--275638	61	2.1	61	95	0	229	40	7	11	40	1.69
277798--277855	25	2.3	24	82	11	64	51	0	0	48	1.00
281901--282215	55	5.7	53	86	3	303	30	23	18	27	1.97
281901--282215	110	2.9	108	84	5	368	30	23	18	27	1.97
281905--282215	165	1.9	165	80	6	362	30	23	17	28	1.97
283483--283568	45	1.9	45	83	4	111	15	30	17	37	1.90
283578--283624	17	2.9	16	78	9	51	4	19	0	76	0.95
283604--283641	15	2.5	15	91	4	58	13	7	0	78	0.94
283605--283650	7	6.9	7	76	18	53	13	10	0	76	1.03
283623--283647	11	2.3	11	100	0	50	16	8	0	76	1.02
293298--293404	45	2.3	47	90	6	164	39	20	9	30	1.84
300995--301037	21	2.0	21	81	0	50	27	27	25	18	1.98
301064--301101	20	1.9	20	88	0	58	23	34	31	10	1.89
301957--302053	32	3.1	32	78	14	128	28	17	18	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301956--302056	31	3.2	31	81	10	125	28	18	18	33	1.95
302044--302137	30	3.1	30	87	3	127	20	21	26	31	1.98
306548--306597	26	2.0	24	85	11	66	26	22	24	28	1.99
314410--314456	2	23.5	2	100	0	94	51	0	0	48	1.00
321200--321241	22	2.0	21	81	13	50	35	0	9	54	1.33
325698--325736	20	2.0	20	94	0	69	53	10	12	23	1.69
325699--325741	20	2.2	20	87	4	61	55	11	11	20	1.66
326294--326397	36	2.9	35	84	4	127	31	20	11	36	1.88
326365--326558	102	1.9	102	84	7	259	35	16	10	37	1.84
326659--326698	21	2.0	21	90	5	64	22	15	12	50	1.77
326977--327262	29	9.6	29	76	13	206	30	13	13	43	1.82
327111--327350	91	2.6	90	84	10	299	27	13	14	44	1.83
327295--327352	26	2.2	26	100	0	116	29	13	15	41	1.86
327296--327414	26	4.2	29	79	12	104	30	15	15	39	1.88
327531--327753	94	2.4	94	84	4	281	26	30	17	24	1.97
327720--327838	40	2.9	39	83	7	132	22	36	19	21	1.95
327621--327862	43	5.5	43	73	13	172	26	33	17	22	1.96
364177--364474	158	1.9	160	89	5	467	44	13	11	29	1.80
368468--368492	2	12.5	2	100	0	50	48	0	0	52	1.00
368488--368519	16	2.0	16	93	0	55	31	0	15	53	1.43
368768--368823	27	2.1	27	96	0	103	44	5	10	39	1.62
372911--372973	31	2.0	31	93	0	108	34	14	26	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373824--373861	2	19.0	2	100	0	76	50	0	0	50	1.00
374280--374340	31	2.0	31	86	0	86	37	9	24	27	1.87
380023--380212	100	1.9	101	94	1	337	31	14	19	34	1.92
385865--385898	6	5.7	6	92	0	59	61	0	2	35	1.11
386593--386642	23	2.2	23	81	0	55	40	4	4	52	1.39
386899--386933	18	1.9	18	88	0	52	65	0	0	34	0.93
387207--387250	3	15.0	3	95	4	81	31	0	0	68	0.90
404976--405033	21	2.8	21	97	0	107	20	39	18	20	1.92
408850--408900	23	2.3	23	89	3	77	33	7	15	43	1.76
411640--411728	34	2.7	31	79	6	88	39	0	2	58	1.11
411868--411921	17	3.2	17	72	0	54	31	0	3	64	1.11
413453--413500	21	2.3	21	85	0	60	25	39	12	22	1.89
413504--413576	21	3.5	21	88	7	112	17	34	27	20	1.95
414098--414195	34	2.9	34	87	0	133	57	4	2	36	1.30
416824--416855	3	10.7	3	100	0	64	31	0	0	68	0.90
418511--418535	2	12.5	2	100	0	50	48	0	0	52	1.00
419138--419173	18	1.9	19	88	5	56	33	19	5	41	1.75
420836--420875	14	2.7	14	84	7	53	32	2	0	65	1.06
420796--420868	23	3.1	23	71	15	60	28	5	0	65	1.14
421240--421276	19	2.1	17	90	10	56	16	2	2	78	0.98
421258--421283	11	2.4	11	100	0	52	15	0	0	84	0.62
423172--423214	14	3.1	14	86	6	52	16	16	9	58	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423182--423214	13	2.4	14	90	5	50	18	18	6	57	1.60
424499--424636	69	2.0	69	95	0	249	37	22	14	25	1.92
426100--426174	37	2.0	38	86	2	107	30	20	14	34	1.92
426263--426418	65	2.3	67	85	5	201	27	20	9	42	1.83
427113--427368	110	2.4	106	85	6	329	34	24	19	21	1.96
428685--428778	14	7.0	14	70	22	67	30	4	0	64	1.12
428839--428933	39	2.5	36	79	11	109	24	4	4	67	1.26
428956--429051	38	2.6	36	75	15	88	21	6	3	68	1.26
429156--429197	19	2.2	19	87	8	59	16	2	2	78	0.96
429156--429199	10	4.5	10	80	13	56	18	2	2	77	0.98

Tables:   1   2   3   4   5   6   7