genome.fa.s8078.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008078.1 Hibiscus syriacus cultivar Beakdansim tig00110580_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1434613

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 813 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1318613--1318688	20	3.8	20	89	1	109	14	25	23	36	1.93
1318634--1318714	20	4.1	19	85	6	81	20	18	25	34	1.96
1318615--1318708	40	2.4	40	82	5	102	17	21	25	36	1.94
1319063--1319131	21	3.3	21	70	9	61	24	39	15	20	1.92
1319053--1319143	42	2.2	42	86	2	130	21	39	15	23	1.91
1319056--1319163	42	2.6	42	83	2	110	23	38	15	22	1.92
1320555--1320593	14	2.8	14	84	0	51	35	0	17	46	1.49
1320691--1320733	20	2.2	20	91	0	68	46	20	18	13	1.83
1320730--1320778	19	2.6	19	96	0	89	51	16	20	12	1.76
1320824--1320911	20	4.4	20	77	5	106	14	20	23	40	1.90
1321125--1321174	20	2.5	20	80	0	73	22	18	22	38	1.94
1322025--1322078	24	2.2	24	90	0	81	22	16	20	40	1.91
1322253--1322277	13	1.9	13	100	0	50	76	0	24	0	0.80
1324608--1324701	33	2.8	33	93	0	152	45	20	23	10	1.82
1324588--1324705	19	6.7	19	68	19	67	44	20	22	12	1.85
1324701--1324777	19	4.3	19	76	18	76	12	15	24	46	1.81
1324717--1324842	33	3.8	33	91	2	182	14	19	20	46	1.84
1324751--1324842	19	5.4	19	68	24	87	16	20	17	45	1.85
1324949--1324985	14	2.6	14	91	0	65	45	24	0	29	1.53
1326335--1326401	21	3.2	21	68	4	55	19	20	35	23	1.95
1326335--1326457	42	2.9	41	79	7	113	22	18	36	21	1.95
1326675--1326859	91	2.0	91	89	6	284	47	18	11	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1328553--1328612	20	3.0	20	82	0	75	48	16	20	15	1.81
1328552--1328737	33	5.4	33	87	5	228	44	19	23	12	1.85
1328601--1328719	14	7.4	14	67	25	58	43	21	23	11	1.85
1329319--1329412	20	4.7	20	80	2	116	22	21	17	39	1.92
1329319--1329412	41	2.3	40	85	1	116	22	21	17	39	1.92
1329380--1329476	41	2.4	42	77	5	108	34	17	21	26	1.96
1329409--1329464	20	2.7	21	80	5	69	42	16	21	19	1.89
1329402--1329474	21	3.5	21	79	3	76	36	17	21	23	1.94
1329510--1329584	21	3.6	21	75	10	73	30	18	25	25	1.98
1329730--1329762	9	3.7	9	84	15	50	54	6	0	39	1.25
1329728--1329905	18	10.3	18	73	15	144	44	6	5	43	1.52
1329728--1329905	51	3.5	51	89	4	277	44	6	5	43	1.52
1329910--1330074	58	2.9	58	83	12	195	43	9	4	43	1.57
1329790--1330074	51	5.0	56	76	19	250	42	8	6	42	1.59
1329948--1329995	25	1.9	25	86	0	69	43	8	6	41	1.60
1330007--1330041	18	1.9	18	94	0	61	51	5	0	42	1.25
1330390--1330715	112	2.9	111	88	5	451	30	26	7	36	1.83
1331218--1331296	2	40.5	2	83	14	94	45	1	2	50	1.23
1331295--1332051	31	24.5	31	83	7	769	23	3	22	49	1.65
1331300--1332051	62	12.2	62	87	1	947	23	3	23	49	1.65
1331295--1332047	93	8.1	93	85	2	969	24	3	22	49	1.66
1331844--1331923	16	5.1	16	66	27	55	25	2	20	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1333465--1333588	51	2.4	53	81	16	129	51	4	2	41	1.36
1333558--1333598	17	2.4	17	95	0	73	46	7	0	46	1.30
1333760--1333835	32	2.4	32	80	8	93	15	13	28	42	1.85
1336630--1336680	20	2.5	20	90	0	84	7	13	15	62	1.52
1336646--1336690	20	2.2	20	84	0	54	15	13	13	57	1.65
1337478--1337512	18	2.1	18	89	10	56	57	2	0	40	1.14
1337583--1337616	17	2.0	17	100	0	68	47	5	0	47	1.26
1337731--1337768	16	2.4	16	90	0	58	34	15	28	21	1.94
1337806--1337870	31	2.1	32	82	8	80	15	12	29	43	1.83
1340033--1340059	2	13.5	2	100	0	54	51	0	0	48	1.00
1341158--1341217	22	2.7	22	79	10	68	50	18	18	13	1.78
1341561--1341612	27	2.1	26	82	13	65	44	21	1	32	1.63
1341753--1341844	29	3.1	29	84	7	89	29	25	13	32	1.93
1341766--1341844	29	2.7	28	86	11	106	29	24	11	35	1.90
1341862--1341981	51	2.4	51	83	5	145	19	32	25	22	1.97
1346213--1346251	18	2.2	18	95	0	69	23	17	30	28	1.97
1347758--1347979	111	2.0	111	94	0	390	43	10	7	37	1.68
1348043--1348081	18	2.2	18	90	4	62	64	2	2	30	1.21
1348272--1348382	50	2.2	51	81	1	125	22	25	30	21	1.99
1351101--1351157	8	7.1	8	100	0	114	26	12	24	36	1.91
1356319--1356394	24	3.2	24	63	26	61	35	5	38	21	1.76
1356315--1356430	48	2.4	48	97	2	216	37	3	37	21	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1356335--1356411	24	3.2	24	63	26	63	32	3	37	25	1.75
1359006--1359031	3	8.7	3	100	0	52	0	0	30	69	0.89
1364181--1364219	21	1.9	21	84	5	53	23	5	46	25	1.73
1376748--1376800	23	2.2	25	80	10	65	49	1	3	45	1.31
1376757--1376812	24	2.4	23	88	8	78	51	0	3	44	1.18
1377598--1377626	2	14.5	2	100	0	58	48	0	0	51	1.00
1379660--1379684	11	2.3	11	100	0	50	32	8	24	36	1.84
1379925--1380447	182	3.0	168	83	8	661	43	11	16	28	1.82
1381575--1382583	411	2.5	402	89	4	1453	38	16	13	31	1.88
1381617--1382584	201	4.8	199	78	8	1035	38	16	14	31	1.88
1385750--1386227	197	2.4	198	79	6	520	38	12	16	33	1.86
1386222--1386384	87	1.9	87	92	0	272	31	16	11	40	1.83
1386306--1386350	23	2.0	23	86	0	63	37	22	6	33	1.80
1392971--1393126	32	4.9	32	88	2	210	25	17	21	35	1.95
1399723--1399878	77	2.0	77	100	0	312	35	17	15	32	1.91
1400358--1400394	12	3.1	12	100	0	74	51	32	16	0	1.45
1403410--1403449	18	2.2	18	95	0	71	40	27	25	7	1.82
1408911--1408953	21	2.0	21	90	0	68	16	25	41	16	1.88
1411689--1411764	20	3.7	21	82	5	102	13	26	40	19	1.88
1411689--1411770	40	2.0	40	88	4	121	13	25	41	19	1.88
1423150--1423190	20	2.0	21	85	4	57	58	2	2	36	1.24
1424584--1424664	3	27.3	3	92	2	137	62	0	2	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1424989--1425526	113	4.8	113	96	0	959	28	18	14	37	1.90
1426277--1426664	83	4.7	82	96	0	695	36	21	12	29	1.91
1426277--1426664	165	2.4	165	95	0	697	36	21	12	29	1.91
1427424--1427460	19	2.0	19	94	5	67	54	5	5	35	1.47
1427424--1427469	16	2.6	18	86	10	60	56	4	6	32	1.45

Tables:   1   2   3   4   5   6   7

The End!