genome.fa.s8100.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008100.1 Hibiscus syriacus cultivar Beakdansim tig00110630_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1372717

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173818--174006	28	7.1	27	69	20	96	44	3	5	46	1.43
173905--174006	49	2.1	49	81	3	118	46	0	4	48	1.30
173944--174026	20	4.2	20	73	22	61	45	0	3	50	1.19
175269--175617	38	9.5	36	73	15	243	42	4	7	46	1.50
175444--175468	11	2.3	11	100	0	50	40	8	8	44	1.63
175312--175603	74	4.0	71	79	12	263	43	4	6	45	1.49
175566--175611	24	1.9	24	82	8	58	34	0	8	56	1.30
176807--176839	18	1.9	18	88	11	52	12	9	0	78	0.95
178656--178700	19	2.4	19	92	3	74	11	13	8	66	1.44
182049--182705	81	8.0	82	75	5	542	30	23	20	25	1.99
182049--182705	164	4.0	164	93	0	1057	30	23	20	25	1.99
182638--182773	68	2.0	68	85	0	182	27	27	18	25	1.98
182476--182937	232	2.0	232	98	0	897	28	24	21	25	1.99
182706--183116	165	2.5	164	86	0	561	29	24	20	24	1.99
182714--183043	84	4.0	83	80	5	344	29	24	21	24	1.99
182706--183120	81	5.1	79	78	7	380	29	24	20	24	1.99
183702--184054	37	9.5	36	73	16	231	42	3	7	46	1.49
183880--183904	11	2.3	11	100	0	50	40	8	8	44	1.63
183774--184040	38	7.2	36	75	13	217	42	4	7	46	1.51
183773--184040	112	2.4	111	79	13	288	42	4	7	45	1.51
184003--184048	24	1.9	24	82	8	58	34	0	8	56	1.30
185241--185273	18	1.9	18	88	11	52	12	9	0	78	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194071--194120	24	2.1	24	82	10	59	28	2	6	64	1.28
194864--194897	3	11.3	3	93	0	59	67	0	0	32	0.91
197636--197759	64	2.0	64	88	4	189	31	13	8	46	1.72
198749--198783	18	1.9	18	94	0	61	20	20	25	34	1.96
199798--199901	3	34.7	3	90	0	163	33	3	0	62	1.13
199900--199956	20	3.1	19	80	11	57	66	1	0	31	1.02
201264--201299	19	1.9	19	94	5	65	22	0	5	72	1.05
202060--202108	18	2.8	18	78	9	57	24	0	2	73	0.94
202099--202135	15	2.7	15	88	12	53	24	5	8	62	1.44
213112--213156	18	2.6	17	89	6	65	31	6	8	53	1.58
213906--214508	84	7.2	84	97	0	1091	28	14	21	36	1.92
215203--215989	113	7.0	113	95	0	1243	37	14	18	29	1.91
216309--216394	3	28.7	3	95	0	154	34	1	0	63	1.02
216393--216437	20	2.3	19	84	3	54	62	2	0	35	1.08
217761--217794	18	1.9	17	94	5	59	23	0	5	70	1.09
218634--218663	2	15.0	2	100	0	60	50	0	0	50	1.00
228524--228592	36	1.9	36	85	5	95	40	13	13	33	1.82
237049--237108	13	4.3	13	72	15	57	43	1	1	53	1.20
238337--238376	2	20.0	2	100	0	80	50	0	0	50	1.00
250361--250660	99	2.9	101	88	4	408	36	25	19	19	1.95
250357--250695	106	3.3	104	85	5	454	35	25	18	20	1.95
252742--252779	19	2.0	20	89	5	60	7	0	10	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253396--253459	26	2.4	27	89	2	94	57	1	1	39	1.17
260025--260142	57	2.1	57	91	0	191	44	8	4	42	1.54
260025--260113	25	3.3	25	69	19	79	43	8	3	43	1.52
263640--263686	21	2.2	22	88	3	69	29	34	25	10	1.90
264531--264580	25	2.0	25	85	14	68	46	0	2	52	1.12
271598--271642	20	2.2	20	80	0	54	33	13	13	40	1.83
272348--272389	12	3.7	11	78	15	50	50	0	0	50	1.00
272449--272491	21	2.0	22	86	4	61	32	25	25	16	1.96
274812--274955	42	3.4	42	91	2	225	36	9	20	34	1.85
276382--276538	65	2.4	65	82	2	199	29	20	17	32	1.96
276524--276595	19	3.8	19	100	0	144	26	34	22	16	1.95
278846--278886	2	20.5	2	94	0	73	48	0	2	48	1.14
280242--280461	20	10.9	20	75	13	166	41	22	19	16	1.90
280318--280460	42	3.5	42	88	3	227	39	23	20	16	1.92
280242--280462	40	5.4	40	79	11	218	41	22	19	16	1.90
280560--280644	6	14.2	6	100	0	170	34	49	16	0	1.46
281124--281208	6	14.2	6	100	0	170	0	16	49	34	1.46
281304--281656	20	17.6	20	77	16	340	15	18	23	42	1.88
281304--281654	40	8.8	40	82	12	375	15	19	23	42	1.89
281304--281656	60	5.9	60	80	14	379	15	18	23	42	1.88
291942--292008	12	5.4	12	72	10	55	17	1	8	71	1.19
292052--292105	21	2.5	22	82	8	67	16	0	11	72	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292023--292101	34	2.3	34	82	4	97	17	0	12	69	1.18
316257--316631	125	3.0	125	97	0	705	44	11	9	34	1.72
320624--320696	36	2.0	36	86	0	101	34	17	4	43	1.68
326863--326976	35	3.2	36	88	5	169	32	3	20	43	1.68
331317--331423	35	3.1	35	90	5	166	33	4	18	42	1.71
333274--333726	224	2.0	227	98	1	885	40	9	11	37	1.74
338569--339163	198	3.0	198	88	3	842	31	16	14	37	1.89
339935--339991	18	3.1	18	87	7	80	15	47	21	15	1.82
339955--339979	13	1.9	13	100	0	50	16	48	16	20	1.82
339972--340012	14	2.9	15	92	7	68	14	34	26	24	1.94
339975--340012	7	5.4	7	90	9	60	13	34	26	26	1.93
341306--341341	18	2.0	18	88	0	54	52	0	16	30	1.44
342374--342468	24	4.0	24	84	0	118	18	14	17	48	1.81
342397--342466	12	5.8	12	81	6	79	14	15	18	51	1.77
342360--342464	48	2.2	48	82	3	122	19	17	16	47	1.83
342377--342468	48	1.9	48	88	0	139	18	15	17	48	1.81
344564--344602	18	2.2	18	95	0	69	20	51	17	10	1.74
344591--344624	15	2.3	15	94	0	59	17	35	23	23	1.95
346491--346700	106	2.0	105	97	2	345	37	15	15	31	1.89
347126--347194	12	5.8	12	80	10	70	14	14	18	52	1.75
347106--347196	47	1.9	48	86	2	130	18	14	17	49	1.80
347103--347196	24	4.0	24	83	2	109	19	13	18	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349198--349231	15	2.3	15	94	0	59	14	35	23	26	1.94
350520--350555	18	2.0	18	88	0	54	52	0	16	30	1.44
351698--351792	24	4.0	24	84	0	118	18	14	17	48	1.81
351721--351790	12	5.8	12	81	6	79	14	15	18	51	1.77
351684--351792	48	2.3	48	85	3	139	18	16	17	47	1.83
352933--352965	2	16.5	2	100	0	66	48	0	0	51	1.00
353329--353375	20	2.3	20	100	0	94	34	14	4	46	1.64
353487--353579	30	3.0	31	76	9	93	48	2	1	48	1.20
353487--353570	31	2.8	28	77	15	80	46	2	1	50	1.22
353560--353604	14	3.1	15	84	6	58	55	2	0	42	1.12
353613--353664	24	2.2	24	80	16	65	38	0	5	55	1.24
353919--353968	23	2.2	23	92	0	82	32	18	12	38	1.87
353903--354220	87	3.7	87	94	0	546	32	14	11	41	1.82
354092--354136	23	2.0	23	86	0	63	40	15	11	33	1.83
354179--354231	23	2.3	23	86	0	70	39	16	7	35	1.78
358825--358884	23	2.5	22	82	15	68	43	0	5	51	1.23
362322--362442	51	2.4	50	81	1	134	14	30	32	22	1.94
362316--362442	50	2.5	51	78	2	141	14	29	33	22	1.94
369013--369081	24	2.8	26	83	12	85	31	24	5	37	1.79
369046--369081	12	3.0	12	91	0	63	36	25	5	33	1.79
369389--369609	64	3.4	63	81	4	169	28	18	19	33	1.95
379057--379083	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380782--380821	20	2.0	20	85	0	53	25	20	17	37	1.94
382888--382953	3	22.3	3	82	3	80	40	0	0	59	0.98
382874--382961	12	7.8	12	69	28	52	39	0	0	60	0.97
383430--383461	15	2.1	15	94	0	55	78	0	21	0	0.76
384327--384550	109	2.1	107	80	9	249	39	8	8	43	1.66
395665--395725	11	6.0	11	75	12	51	83	1	13	1	0.79
395668--395730	7	9.3	7	75	14	53	84	1	12	1	0.78
395668--395730	27	2.3	28	84	12	87	84	1	12	1	0.78
396860--397308	83	5.4	83	95	0	799	27	13	22	36	1.91
398111--399005	113	7.9	113	95	0	1547	35	15	18	30	1.92

Tables:   1   2   3   4   5   6   7