genome.fa.s8100.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008100.1 Hibiscus syriacus cultivar Beakdansim tig00110630_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1372717

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675001--675042	22	1.9	22	85	9	59	35	14	26	23	1.93
675761--675822	22	2.7	23	87	5	99	22	22	25	29	1.99
679944--679986	20	2.2	20	86	0	59	34	20	13	30	1.92
685852--685894	20	2.2	20	86	0	59	34	20	13	30	1.92
684069--685961	946	2.0	946	94	1	3301	29	24	19	26	1.99
689646--689694	23	2.1	23	92	0	80	18	18	24	38	1.93
693876--693958	29	2.8	29	94	1	148	40	13	14	31	1.84
696697--696749	21	2.5	21	78	0	52	73	11	15	0	1.09
700361--700407	18	2.5	19	96	3	87	80	6	12	0	0.88
700335--700412	41	1.9	41	82	10	97	79	7	12	0	0.93
712800--712882	29	2.8	29	94	1	148	40	13	14	31	1.84
713460--713484	7	3.6	7	100	0	50	40	16	28	16	1.89
714180--714245	29	2.3	28	77	10	71	24	21	7	46	1.76
719176--719222	18	2.6	18	82	0	58	2	19	6	72	1.17
719175--719216	16	2.6	16	81	11	50	2	14	9	73	1.18
721601--721702	52	1.9	54	80	13	122	42	0	6	50	1.36
721888--721948	24	2.5	25	81	5	63	65	0	3	31	1.09
723735--723771	19	1.9	19	100	0	74	54	5	10	29	1.57
728736--728788	22	2.4	22	75	12	54	32	9	20	37	1.85
731826--731862	6	6.2	6	93	0	65	0	16	45	37	1.47
732137--732189	22	2.4	22	75	12	54	32	9	20	37	1.85
736488--736532	21	2.3	19	84	7	54	20	8	0	71	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
741336--741374	2	19.5	2	100	0	78	48	0	0	51	1.00
746176--746240	7	8.7	7	79	15	69	83	4	10	1	0.87
746176--746240	32	2.2	30	86	10	89	83	4	10	1	0.87
746170--746251	23	3.6	21	76	15	74	79	6	13	1	0.98
747016--747092	22	3.5	22	94	0	136	37	27	14	20	1.91
747804--747937	37	3.7	35	81	7	151	26	20	14	38	1.92
747804--747941	36	3.8	36	82	6	163	26	20	14	39	1.91
747942--749004	106	10.0	106	90	0	1617	33	25	18	22	1.96
750336--750373	20	1.9	20	88	0	58	26	7	2	63	1.35
750318--750403	37	2.3	39	80	8	106	20	9	1	68	1.24
750513--750561	18	3.1	15	78	21	55	24	6	0	69	1.11
755806--755838	10	3.5	10	92	8	52	81	0	18	0	0.68
755805--755852	19	2.8	17	80	17	55	79	2	18	0	0.84
755805--755864	27	2.2	27	85	11	79	80	1	18	0	0.80
755816--755864	12	3.9	13	77	15	50	81	2	16	0	0.78
755814--755864	10	5.3	9	76	19	50	82	1	15	0	0.76
758842--758971	22	6.3	19	70	20	84	25	3	0	70	1.06
758837--758973	40	3.7	35	70	20	86	25	2	0	70	1.06
758882--758970	30	2.9	30	76	21	78	28	3	0	68	1.05
758873--758961	34	2.6	34	76	15	87	29	3	1	66	1.15
758833--758921	47	2.0	46	82	14	114	25	2	2	69	1.11
759194--759280	38	2.3	38	84	7	108	39	5	0	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
759364--759429	23	3.4	17	72	25	51	21	4	4	69	1.24
759443--759482	20	2.0	20	90	0	62	32	2	0	65	1.06
759515--759540	2	13.0	2	100	0	52	50	0	0	50	1.00
763510--763547	16	2.2	18	86	13	62	44	15	0	39	1.47
764857--764933	33	2.3	33	90	0	127	15	24	16	42	1.87
765025--765113	39	2.3	39	84	7	110	44	1	1	52	1.15
765036--765092	25	2.3	24	79	8	60	43	1	1	52	1.21
769218--769252	16	2.1	17	89	5	54	40	0	0	60	0.97
770437--770485	21	2.3	21	79	6	64	22	24	18	34	1.96
770475--770526	21	2.5	21	87	3	70	38	17	23	21	1.93
770460--770710	41	6.1	41	74	7	186	33	19	19	27	1.96
770536--770608	21	3.5	21	75	3	67	23	20	17	38	1.93
770475--770712	20	11.6	21	75	10	170	34	18	20	26	1.95
771317--771475	19	9.1	19	70	20	123	11	23	22	43	1.85
771339--771467	33	3.9	33	94	1	204	10	23	24	41	1.86
771358--771446	14	5.6	14	69	23	61	10	23	24	41	1.85
771317--771433	52	2.2	52	78	11	125	11	22	23	43	1.84
771539--771593	25	2.2	26	81	15	71	18	9	18	54	1.69
773620--773686	21	3.2	21	66	6	55	23	35	20	19	1.95
773568--773686	42	2.8	42	81	5	107	22	36	18	22	1.95
775038--775073	14	2.6	14	95	0	63	30	0	25	44	1.54
775180--775297	19	6.7	19	74	20	105	47	22	19	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
775180--775302	52	2.3	52	88	4	176	47	21	18	11	1.80
775212--775307	19	5.3	19	80	14	107	46	23	16	12	1.81
775307--775433	33	3.8	33	93	0	209	11	23	18	46	1.81
775427--775499	20	3.6	20	68	17	51	24	16	24	34	1.95
777767--777811	3	15.0	3	85	0	63	0	26	0	73	0.84
777763--777811	12	4.1	12	100	0	98	0	26	0	73	0.83
777986--778039	24	2.2	24	90	0	81	40	20	16	22	1.91
778796--778914	20	5.9	20	89	3	132	30	16	28	24	1.97
778796--778914	40	3.0	40	90	2	177	30	16	28	24	1.97
778922--778976	20	2.7	21	82	5	67	40	14	21	23	1.90
778965--779025	21	3.0	20	70	13	61	36	24	18	21	1.95
779266--779339	20	3.7	20	92	0	121	37	22	22	16	1.93
779365--779409	19	2.4	19	88	0	63	17	22	20	40	1.92
780996--781087	42	2.2	42	88	3	143	20	15	42	21	1.89
781022--781087	21	3.1	21	74	8	71	21	13	43	21	1.86
781423--781475	20	2.7	20	87	0	70	33	28	13	24	1.93
781429--781562	40	3.4	40	82	5	130	38	24	20	17	1.93
781449--781543	20	4.8	20	88	3	131	34	24	24	16	1.95
781581--781697	19	6.6	19	72	19	92	13	20	21	44	1.86
781603--781661	14	3.9	14	76	20	64	10	16	23	49	1.77
781586--781677	33	2.8	33	96	0	166	11	17	21	48	1.79
781663--781705	20	2.2	20	91	4	70	20	23	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
782251--782298	18	2.7	18	93	0	87	14	12	45	27	1.81
783617--783675	20	3.0	20	87	0	73	44	22	18	15	1.87
783938--783981	22	2.0	22	100	0	88	18	13	45	22	1.84
784168--784281	20	5.7	20	84	6	131	22	16	27	33	1.96
784165--784285	41	3.0	40	86	1	161	22	15	25	36	1.94
784175--784345	41	4.2	41	83	5	127	23	18	22	35	1.96
784271--784364	21	4.5	21	93	1	145	21	23	17	38	1.93
784271--784379	42	2.6	42	85	1	103	23	22	18	35	1.95
784354--784406	21	2.5	22	81	6	74	33	18	26	20	1.96
790066--790184	39	3.1	39	76	12	120	47	0	15	36	1.46
794634--794816	95	1.9	94	85	5	253	37	12	23	26	1.90
795310--795391	26	3.4	26	66	22	79	43	12	24	19	1.85
795240--795418	45	4.0	45	92	0	277	44	13	22	19	1.85
796518--796633	45	2.6	45	77	2	126	30	31	18	20	1.96
797672--797730	21	2.8	22	79	5	59	23	18	18	38	1.93
798262--798301	15	2.8	14	85	14	55	60	0	32	7	1.25
799317--799369	26	2.0	26	88	0	79	33	24	11	30	1.90
809852--809883	14	2.3	14	94	0	55	15	12	25	46	1.81
810560--810597	10	3.8	10	86	10	51	60	21	18	0	1.36
810560--810593	10	3.3	11	88	12	54	67	17	14	0	1.23
819591--819783	100	1.9	100	94	0	341	28	15	11	45	1.80
820427--820474	20	2.4	20	85	0	69	25	25	14	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
821529--821564	15	2.4	15	85	0	54	47	0	0	52	1.00
821513--821588	22	3.2	24	70	12	68	44	0	2	52	1.14
823604--823636	17	2.0	17	88	5	50	39	0	0	60	0.97
826514--826758	127	1.9	127	93	0	418	35	14	13	36	1.86
827085--827147	28	2.3	27	78	8	63	46	1	3	49	1.27
827227--827260	16	2.0	18	88	11	54	64	5	2	26	1.30
827383--827425	21	2.0	21	100	0	86	39	0	13	46	1.44
827394--827479	35	2.5	35	84	0	100	37	1	20	40	1.61
827610--827667	29	2.0	29	86	6	82	27	8	29	34	1.87
828885--828925	21	2.0	20	90	4	64	29	34	12	24	1.91

Tables:   1   2   3   4   5   6   7