genome.fa.s8111.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008111.1 Hibiscus syriacus cultivar Beakdansim tig00110647_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1666726

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1021 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233358--233432	23	3.4	22	82	10	82	29	29	14	26	1.95
236833--237121	147	2.0	147	93	0	497	32	13	22	31	1.93
238568--238617	5	10.2	5	97	2	93	20	20	18	42	1.90
241383--241545	86	1.9	88	82	5	206	30	19	26	24	1.98
241512--241711	84	2.4	85	88	3	287	30	21	23	25	1.99
241401--241712	43	7.3	42	85	2	302	30	20	23	25	1.98
244769--244815	17	2.8	17	96	0	85	40	6	25	27	1.80
245241--245326	43	2.0	44	90	2	138	37	20	17	24	1.94
245296--245396	37	2.6	38	80	12	109	31	17	24	25	1.97
245437--245571	41	3.3	40	76	3	135	31	20	14	33	1.93
245692--246294	117	5.1	116	82	4	617	39	15	19	25	1.90
245690--246298	235	2.6	234	82	5	694	40	15	19	25	1.90
251663--251725	31	2.0	31	93	0	108	50	20	12	15	1.77
251837--252249	205	2.0	207	99	0	812	38	10	20	30	1.86
252684--252714	3	10.3	3	100	0	62	32	0	0	67	0.91
253797--253850	14	3.9	13	87	4	63	11	12	18	57	1.64
253798--253856	28	2.1	28	84	6	75	10	15	18	55	1.67
253795--253874	24	3.2	24	72	19	72	13	12	18	55	1.70
254067--254130	33	1.9	33	90	0	101	10	15	17	56	1.67
254166--254287	35	3.5	35	94	2	210	42	21	14	21	1.88
258820--258896	38	2.0	38	100	0	154	29	23	23	23	1.99
260303--260341	18	2.2	18	90	0	60	20	33	0	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265472--265506	18	1.9	18	94	0	61	22	34	0	42	1.54
267774--267866	46	2.0	46	87	6	134	17	6	26	49	1.70
268274--268600	55	6.0	55	85	4	416	28	26	18	26	1.98
269989--270035	24	2.0	24	100	0	94	2	21	0	76	0.89
270045--270078	11	2.9	12	86	8	52	5	11	0	82	0.83
270034--270078	23	2.0	23	86	0	63	11	8	0	80	0.92
270031--270081	12	4.3	12	85	5	68	9	7	0	82	0.85
270044--270081	11	3.4	11	80	20	51	5	10	0	84	0.77
279723--279820	45	2.1	47	88	5	146	38	20	13	27	1.90
282564--282659	46	2.1	47	88	2	140	16	6	26	51	1.68
284943--285003	31	2.0	31	93	0	104	37	8	13	40	1.74
285381--285416	15	2.4	15	100	0	72	27	22	22	27	1.99
285844--285893	16	3.1	16	85	8	66	26	24	8	42	1.82
290754--290817	22	3.2	22	64	35	63	32	10	23	32	1.89
290760--290822	19	3.4	19	66	33	55	33	11	23	31	1.90
292011--292085	20	3.8	20	80	1	80	37	16	8	38	1.78
294750--294815	23	2.8	23	78	15	64	43	1	3	51	1.26
294878--294919	21	2.0	21	86	4	59	42	0	0	57	0.99
295614--295662	25	2.0	25	87	0	71	32	30	0	36	1.58
297434--297468	18	1.9	18	88	11	54	20	11	2	65	1.37
311545--311633	33	2.7	33	96	0	160	56	3	8	31	1.47
316187--316218	3	10.7	3	93	0	55	37	0	34	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320236--320345	54	2.0	54	100	0	220	35	14	20	30	1.92
323466--323565	50	2.0	50	100	0	200	28	12	34	26	1.92
323945--324127	55	3.3	56	75	15	198	39	3	4	51	1.41
323924--324122	110	1.8	110	96	0	371	40	4	4	50	1.41
326268--326324	30	1.9	30	85	7	80	28	1	10	59	1.40
326506--326534	15	1.9	15	100	0	58	34	24	6	34	1.82
327299--327341	15	2.7	16	75	13	52	53	4	0	41	1.21
328693--328751	3	19.7	3	89	6	93	67	0	0	32	0.91
329090--329389	113	2.7	113	89	0	447	27	20	14	37	1.92
330199--330316	22	5.4	22	94	0	200	41	13	11	33	1.80
331613--331936	76	4.3	75	84	2	337	31	22	14	31	1.93
331615--331944	151	2.2	150	81	3	376	31	22	14	32	1.93
337072--337127	27	2.1	27	89	0	85	60	5	12	21	1.51
337187--337228	7	6.0	7	78	10	50	57	11	14	16	1.66
338705--338762	28	2.1	28	84	6	75	60	1	5	32	1.29
339752--339776	13	1.9	13	100	0	50	40	12	0	48	1.40
340893--340947	3	18.7	3	81	10	60	65	0	0	34	0.93
340881--340938	27	2.1	27	87	6	82	62	0	0	37	0.96
346209--346282	20	3.7	20	75	1	67	25	18	20	35	1.96
346370--346475	44	2.4	44	87	3	160	28	11	16	43	1.83
354126--354173	22	2.2	22	96	0	87	41	10	18	29	1.84
355056--355439	54	7.1	55	86	3	451	35	21	16	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355071--355439	162	2.3	163	84	4	498	35	21	16	26	1.94
361479--361814	54	6.2	54	82	1	377	36	21	17	25	1.95
362476--362518	22	2.0	22	85	0	59	34	6	23	34	1.82
362719--362775	22	2.6	22	88	0	78	45	29	17	7	1.75
363267--363329	4	15.8	4	100	0	126	25	0	23	50	1.49
364192--364249	27	2.1	27	100	0	116	29	10	13	46	1.77
364467--364510	23	1.9	24	86	9	65	40	2	6	50	1.42
366032--366235	94	2.2	94	83	2	248	24	25	15	34	1.95
378171--378288	43	2.9	41	82	7	134	27	20	22	29	1.98
378402--379037	228	2.8	228	85	2	866	32	16	18	32	1.93
378862--378958	42	2.3	42	78	5	108	24	23	20	30	1.98
379036--379081	24	1.9	24	90	0	74	78	0	6	15	0.95
380491--380521	2	15.5	2	100	0	62	48	0	0	51	1.00
389869--390655	436	1.8	435	79	5	928	34	18	16	31	1.93
391274--391320	13	3.8	12	86	8	51	27	2	0	70	0.99
391275--391320	7	6.7	7	80	11	51	28	2	0	69	1.00
391280--391314	13	2.8	13	91	4	54	28	2	0	68	1.04
391275--391350	3	24.7	3	72	15	57	32	2	1	63	1.17
406877--407572	226	3.1	225	92	4	1169	44	7	8	39	1.63
407612--407667	23	2.4	23	90	0	94	35	5	21	37	1.76
408083--408146	23	2.8	23	90	0	101	35	4	21	37	1.75
407373--410919	479	7.5	483	95	2	6378	41	7	11	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408561--408623	22	2.8	23	90	2	101	36	4	22	36	1.75
409043--409106	23	2.8	23	90	0	101	35	4	21	37	1.75
409520--409578	23	2.6	23	91	0	100	35	5	22	37	1.76
409986--410047	23	2.8	23	85	4	83	33	4	22	38	1.76
410460--410523	23	2.8	23	90	0	101	35	4	21	37	1.75
414302--414388	32	2.8	32	77	8	97	32	17	17	33	1.93
414303--414426	31	4.0	32	78	7	112	30	18	19	31	1.96
415255--415297	22	2.0	21	86	4	59	18	23	32	25	1.97
415593--415642	20	2.5	20	90	0	82	14	22	8	56	1.64
418776--418852	41	1.9	39	86	5	109	48	6	28	16	1.71
419156--419228	38	1.9	38	86	5	103	63	1	2	32	1.17
419153--419251	46	2.2	45	88	1	144	62	1	3	33	1.17
419642--419712	35	2.0	35	91	0	115	32	15	4	47	1.65
420697--420835	74	1.9	74	87	3	206	11	20	12	55	1.68
428795--428865	14	5.1	14	74	16	58	73	1	8	16	1.15
428833--428857	9	2.8	9	100	0	50	80	0	0	20	0.72
429217--429242	2	13.0	2	100	0	52	50	0	0	50	1.00
429502--429537	18	2.1	18	89	5	56	66	2	5	25	1.27
434062--434086	2	12.5	2	100	0	50	52	0	0	48	1.00
434142--434169	2	14.0	2	100	0	56	50	0	0	50	1.00
434356--434391	18	2.1	18	89	5	56	66	2	5	25	1.27
438542--438644	2	51.5	2	100	0	206	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438845--438898	28	2.0	28	85	3	74	57	1	0	40	1.09
438890--438957	21	3.2	21	62	22	52	39	2	5	51	1.41
438878--438963	42	2.1	42	86	2	120	46	2	4	46	1.36
438904--438976	15	5.1	15	69	15	64	42	1	2	53	1.23
438889--438977	42	2.1	42	100	0	178	41	2	4	51	1.34
439130--439173	20	2.3	19	85	11	63	20	25	9	45	1.80
439136--439173	20	1.9	20	94	0	67	21	23	10	44	1.83
446314--446469	65	2.4	64	84	3	197	30	18	23	27	1.98
446908--447131	38	6.3	37	77	16	215	42	3	10	43	1.56
446926--446975	25	2.0	26	88	4	75	46	6	6	42	1.53

Tables:   1   2   3   4   5   6   7   8   9