Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008111.1 Hibiscus syriacus cultivar Beakdansim tig00110647_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1666726

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1021 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1581332--1581369
16
2.3
17
86
13
53
47
13
0
39
1.42
1581251--1581412
82
2.0
83
95
1
290
50
9
2
38
1.48
1581434--1581460
14
1.9
14
100
0
54
74
14
3
7
1.18
1581834--1581877
21
2.1
21
91
0
70
54
15
0
29
1.42
1581800--1581864
28
2.3
28
84
10
96
53
10
0
35
1.36
1582480--1582547
29
2.3
29
94
0
118
19
29
32
19
1.96
1582652--1582711
29
2.1
29
93
0
102
16
38
30
15
1.89
1584421--1584492
31
2.3
31
95
0
126
36
15
11
37
1.83
1587022--1587380
43
8.4
43
80
6
327
51
5
15
27
1.65
1587017--1587420
87
4.8
85
77
8
376
52
5
14
26
1.65
1587063--1587479
43
9.9
43
76
11
247
53
5
14
26
1.62
1587601--1587709
30
3.6
30
77
10
116
42
8
11
38
1.70
1587663--1587711
14
3.4
14
77
5
53
44
12
8
34
1.71
1591818--1591882
15
4.3
15
100
0
130
27
33
24
13
1.93
1593607--1593643
4
9.0
4
96
3
65
27
0
0
72
0.84
1595783--1595820
13
2.9
13
96
0
67
21
0
2
76
0.91
1595909--1595943
17
2.1
17
88
0
52
37
2
0
60
1.12
1596295--1596319
2
12.5
2
100
0
50
48
0
0
52
1.00
1599516--1599945
54
8.0
54
85
3
535
35
16
17
31
1.92
1599515--1599945
162
2.7
162
87
1
605
35
16
17
31
1.91
1599515--1599998
162
3.0
162
84
2
499
35
15
17
31
1.91
1601274--1601313
15
2.7
15
96
3
73
15
10
20
55
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1607306--1607347
15
2.7
15
85
3
57
33
2
0
64
1.07
1607317--1607345
15
1.9
15
100
0
58
34
0
0
65
0.93
1608217--1608270
28
1.9
28
85
7
74
44
0
1
53
1.11
1608885--1609002
59
2.0
60
80
8
134
43
15
11
30
1.81
1617161--1617187
2
13.5
2
100
0
54
48
0
0
51
1.00
1617204--1617242
21
1.9
21
89
5
62
48
2
0
48
1.15
1618165--1618323
65
2.5
62
86
7
221
31
23
16
28
1.96
1624115--1624212
44
2.2
44
87
7
137
29
23
19
27
1.98
1624135--1624218
23
3.7
22
75
9
89
26
25
21
27
1.99
1626288--1626324
13
2.8
13
100
0
74
37
0
16
45
1.47
1626919--1627026
45
2.4
46
87
7
150
29
20
18
31
1.96
1628210--1628279
31
2.3
31
82
0
86
28
18
10
42
1.82
1628221--1628287
31
2.2
31
91
0
107
22
22
11
43
1.86
1630693--1630775
29
2.8
29
96
1
148
36
13
15
34
1.87
1632059--1632126
31
2.2
31
89
0
100
35
13
27
23
1.92
1634395--1634438
3
15.0
3
95
4
81
34
0
0
65
0.93
1634397--1634463
23
2.8
23
81
6
62
44
1
0
53
1.09
1635187--1635229
20
2.2
20
91
0
68
18
9
46
25
1.79
1635247--1635369
30
4.1
30
98
0
228
29
17
30
22
1.97
1635901--1635928
2
14.0
2
100
0
56
50
0
0
50
1.00
1636225--1636272
24
1.9
24
83
8
60
31
4
4
60
1.35
1644562--1644672
54
2.0
55
91
1
179
38
14
22
24
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1645943--1645976
9
3.8
9
92
0
59
47
14
8
29
1.75
1645943--1645977
18
1.9
18
100
0
70
45
17
8
28
1.77
1646339--1648255
177
10.8
177
91
0
2985
31
17
20
30
1.95
1648276--1648453
73
2.4
73
95
0
311
30
15
10
43
1.81
1648276--1648455
36
5.0
35
68
6
135
30
15
10
43
1.81
1648466--1649055
125
4.8
125
86
4
802
36
16
20
27
1.94
1648466--1649087
249
2.5
244
87
5
858
36
16
19
26
1.93
1649874--1649934
23
2.7
23
86
0
86
29
26
24
19
1.99
1653784--1653827
2
22.5
2
95
4
81
50
0
0
50
1.00
1664306--1664372
14
5.1
14
74
18
56
10
7
1
80
0.96
1664320--1664370
17
2.9
17
78
13
50
7
7
1
82
0.92
1664488--1664647
9
17.6
9
73
17
68
14
7
2
75
1.12
1664488--1664585
18
5.5
17
77
17
85
15
5
3
76
1.08
1664498--1664647
16
8.8
15
70
24
61
14
8
2
76
1.10
1664613--1664665
24
2.2
25
82
3
63
13
13
1
71
1.22
1665226--1665274
18
2.8
18
87
3
73
28
28
8
34
1.86
1665903--1666701
3
269.0
3
80
8
715
57
0
40
1
1.08

Tables:   1   2   3   4   5   6   7   8   9

The End!