genome.fa.s8117.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008117.1 Hibiscus syriacus cultivar Beakdansim tig00110656_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1567030

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 808 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260279--260318	21	2.0	21	85	9	57	55	7	0	37	1.29
281447--281485	18	2.2	18	85	0	51	64	2	0	33	1.08
284538--284563	12	2.2	12	100	0	52	0	7	0	92	0.39
285380--285438	20	2.9	20	77	10	66	44	6	0	49	1.29
286046--286070	2	12.5	2	100	0	50	48	0	0	52	1.00
289253--289277	13	1.9	13	100	0	50	20	0	16	64	1.30
289288--289312	3	8.3	3	100	0	50	36	0	0	64	0.94
292631--292765	37	3.8	35	86	4	164	29	14	13	42	1.84
292665--292766	34	2.9	35	91	8	163	28	14	13	43	1.84
292893--292934	20	2.1	20	100	0	84	21	30	14	33	1.93
293334--294170	105	8.0	105	94	0	1359	21	17	27	33	1.96
294771--294836	33	2.0	33	82	5	80	34	13	19	31	1.91
294813--295266	65	6.7	65	72	11	284	38	11	20	30	1.87
294945--295207	36	7.4	36	77	9	254	39	13	19	27	1.89
294897--295266	138	2.7	138	83	0	463	38	11	19	30	1.88
294981--295165	102	1.8	102	85	2	264	39	13	17	29	1.88
295628--295663	18	2.0	18	88	0	54	41	30	8	19	1.81
296068--296122	22	2.5	22	96	0	101	23	12	25	38	1.90
296767--296849	16	5.1	15	73	20	62	0	14	8	77	0.99
300177--300219	2	21.5	2	95	0	77	53	0	0	46	1.00
300625--300759	37	3.8	35	86	4	164	29	14	13	42	1.84
300659--300760	34	2.9	35	91	8	163	28	14	13	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301102--301126	2	12.5	2	100	0	50	48	0	0	52	1.00
301906--302167	131	2.0	131	99	0	515	30	15	20	34	1.93
302540--302570	2	15.5	2	100	0	62	51	0	0	48	1.00
306268--306309	21	2.0	21	100	0	84	0	52	4	42	1.22
309879--309920	14	2.9	14	86	13	59	69	4	0	26	1.08
309880--309930	14	3.3	16	78	15	54	68	1	1	27	1.11
310440--310466	4	6.8	4	100	0	54	74	0	0	25	0.83
315431--315468	20	1.9	20	100	0	76	36	10	28	23	1.88
315431--315481	20	2.8	18	88	11	61	39	9	27	23	1.86
316608--316659	26	2.0	26	100	0	104	46	15	15	23	1.83
322848--322883	13	2.6	14	86	4	56	63	22	8	5	1.43
323146--323193	14	3.7	14	78	21	68	58	14	12	14	1.64
323146--323211	24	2.7	24	88	4	96	56	16	12	15	1.68
328826--328872	21	2.2	21	88	0	67	14	10	10	63	1.51
329770--329808	21	1.9	20	89	5	60	2	51	0	46	1.14
329822--329881	22	2.7	22	100	0	120	11	36	0	51	1.38
329911--332516	540	4.8	540	98	0	4907	30	15	6	47	1.71
336505--336644	36	3.9	36	87	9	214	36	20	22	20	1.95
339924--339989	23	2.9	23	93	0	105	16	24	27	31	1.96
339925--340004	23	3.5	23	86	3	99	17	22	26	33	1.96
339924--340025	46	2.2	46	82	3	116	17	22	24	35	1.95
339947--340025	23	3.4	23	85	0	86	16	21	24	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339937--340048	46	2.4	45	78	11	118	18	20	25	35	1.95
342323--342811	261	1.9	259	89	5	761	27	12	19	40	1.88
343254--343300	18	2.7	18	86	3	60	27	29	12	29	1.93
343259--343305	18	2.6	17	83	9	58	25	34	8	31	1.86
345358--345385	14	2.0	14	100	0	56	42	28	7	21	1.79
353604--353634	6	5.2	6	92	0	53	29	35	19	16	1.93
355368--355498	47	2.8	48	79	10	135	30	21	6	41	1.79
361449--361527	21	3.7	21	77	8	70	25	36	22	15	1.93
363635--363680	22	2.1	22	95	0	83	23	32	23	19	1.97
364193--364256	21	3.0	21	81	4	83	28	23	21	26	1.99
365242--365279	19	2.0	20	89	5	60	60	0	31	7	1.25
365610--365683	23	3.2	23	77	17	64	16	1	27	55	1.49
376493--376525	16	2.1	16	100	0	66	30	33	18	18	1.94
384246--384334	30	3.0	30	94	0	160	32	12	12	42	1.80
384515--384551	2	18.5	2	100	0	74	48	0	0	51	1.00
389707--389736	15	2.0	15	93	0	51	16	0	30	53	1.44
390025--390081	26	2.1	28	80	6	64	47	15	14	22	1.82
395021--395072	23	2.3	23	86	0	68	46	1	0	51	1.12
395060--395112	19	2.7	20	72	16	56	50	0	1	47	1.12
395100--395139	20	2.0	20	85	5	53	52	0	0	47	1.00
395068--395232	29	5.8	29	69	19	116	52	1	1	45	1.16
395177--395235	31	1.9	31	86	13	86	54	1	0	44	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396314--396347	16	2.1	17	88	5	52	50	0	0	50	1.00
396314--396353	17	2.4	16	87	4	53	47	0	0	52	1.00
413263--413296	11	3.1	11	82	0	50	44	0	0	55	0.99
413725--413806	28	3.0	28	94	1	139	40	7	0	52	1.29
420465--420505	20	2.0	20	95	0	73	43	24	19	12	1.85
421668--421879	74	2.7	75	88	7	291	27	12	19	40	1.88
421891--421922	14	2.3	14	94	0	55	21	9	31	37	1.85
422280--422671	156	2.5	156	87	3	531	46	5	19	28	1.72
426528--426568	2	20.5	2	100	0	82	48	0	0	51	1.00
433170--433197	14	2.0	14	100	0	56	35	14	7	42	1.73
433997--434098	22	4.6	23	64	25	58	47	0	0	50	1.14
434041--434118	25	3.4	23	74	12	56	47	1	0	51	1.09
434036--434118	43	1.9	44	80	11	100	48	1	0	50	1.08
434178--434218	13	2.8	15	75	17	50	39	0	0	60	0.96
434249--434332	22	3.9	22	71	13	59	46	1	1	51	1.16
434527--434585	14	4.2	14	93	0	91	33	13	8	44	1.74
435740--435778	19	2.1	19	85	9	53	56	12	0	30	1.37
453582--453607	2	13.0	2	100	0	52	50	0	0	50	1.00
463027--463079	25	2.1	25	92	0	88	32	26	22	18	1.97
463908--464091	59	2.9	63	77	18	211	29	4	11	53	1.58
465735--465790	25	2.3	23	76	8	58	48	5	14	32	1.66
465758--465847	26	3.5	26	72	10	69	46	6	15	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466614--466639	12	2.2	12	100	0	52	0	57	0	42	0.98
468875--469017	75	1.9	76	82	4	180	34	16	18	30	1.92
469028--469129	41	2.5	41	85	3	125	28	15	19	36	1.93
469311--469389	26	3.1	26	80	10	85	39	3	15	41	1.65
469415--469530	62	1.9	61	85	5	162	43	0	16	40	1.48
469824--469901	37	2.1	38	95	4	142	32	24	10	33	1.89
471329--471805	239	2.0	236	94	5	838	28	19	22	28	1.98
489018--489093	3	25.0	3	86	2	98	38	0	1	60	1.05
491313--491364	20	2.6	21	74	14	56	26	5	0	67	1.13
496029--496060	14	2.3	14	94	0	55	84	0	12	3	0.74
496025--496059	17	2.0	18	88	5	54	85	0	11	2	0.69
498305--498530	114	2.0	114	91	0	362	33	15	20	30	1.94
500612--500730	54	2.3	53	85	4	152	38	15	21	24	1.92
501082--501136	22	2.5	22	93	0	101	34	10	14	40	1.81
501813--502112	76	3.9	76	98	0	573	22	21	21	35	1.96
502063--502162	31	3.4	31	72	16	113	25	18	20	37	1.94
502052--502168	56	2.1	56	98	0	225	23	21	18	36	1.95
501976--502244	132	2.0	132	97	0	511	22	21	20	36	1.96
502108--502555	76	5.9	76	97	0	826	21	22	21	34	1.97
501900--502320	208	2.0	208	97	0	797	22	21	20	35	1.96
501824--502396	284	2.0	284	97	0	1092	22	21	20	35	1.96
502711--502786	3	25.0	3	87	2	107	36	0	1	61	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502711--502795	15	5.2	16	84	12	95	38	0	1	60	1.05
504191--504295	53	2.0	53	81	9	124	27	4	3	63	1.32
504247--504322	35	2.2	35	79	9	84	35	3	1	59	1.24
514542--514615	38	1.9	38	81	5	87	52	22	10	13	1.71
514576--514707	16	8.2	16	72	9	99	42	28	12	15	1.84
514576--514687	32	3.5	33	80	9	133	41	28	12	16	1.85
515294--515326	16	2.1	16	88	11	50	36	3	3	57	1.29
515387--515480	32	2.9	31	78	9	91	35	28	12	23	1.92
515464--515494	16	2.0	15	93	6	53	22	32	19	25	1.97
515634--515665	15	2.1	15	94	0	55	31	40	18	9	1.83

Tables:   1   2   3   4   5   6   7